Detailed information on CNT30582613


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672983Echinochloa crusgalliSetaria viridis3031.7593.88147forward
CNT30292293Echinochloa crusgalliTriticum aestivum18.1636.4884.2789forward
CNT30555733Echinochloa crusgalliOryza glaberrima3010.3487.76147forward
CNT30115596Echinochloa crusgalliOryza nivara26.336087.6129forward

Expression of CNT30582613

Peptides detected in this lncRNA

>peptide 1 (80 aa)
KRIHLFIAHRSVDLLTFSAWMALTVKRGRLVSAAPERPLGLECTKLLFITWLAMGAYAVAISTSSCLSHTQELFFLPAKW*

>peptide 2 (83 aa)
MVVRCLLVAKLMFVIMQGSVLGENPWMDGALQLRYGSELCGADWVKGVSNPIPYPNAWRSPPSTGPPSWHCPRTDTWKQNLQC*

Sequence

>CNT30582613
AAAAAGGATCCATCTTTTCATTGCTCATCGATCAGTTGATCTACTGACCTTCTCGGCCTGGATGGCCTTGACGGTGAAGCGGGGCCGCCTCGTCAGCGCA
GCGCCTGAGAGGCCCCTAGGCCTGGAGTGCACCAAGCTGCTCTTCATCACCTGGCTCGCCATGGGAGCGTACGCCGTGGCCATCTCGACCTCTTCCTGTC
TCTCTCACACACAAGAGCTCTTCTTCCTTCCTGCAAAATGGTAGTAAGATGTCTGCTTGTGGCTAAATTAATGTTTGTGATCATGCAGGGGAGTGTGTTG
GGAGAAAATCCGTGGATGGATGGGGCCCTGCAGCTGAGATATGGCTCAGAGCTGTGTGGCGCTGATTGGGTGAAGGGAGTGAGCAACCCTATCCCTTATC
CGAACGCGTGGAGATCTCCTCCCTCCACTGGTCCGCCTAGCTGGCACTGCCCGCGCACCGACACGTGGAAACAGAATCTGCAGTGCTAGT