« Back to Echinochloa crusgalli search


Detailed information on CNT30582550


BLAST search results

BLAST vs Swiss-Prot:
sp|P05348|RBS_MAIZE, E-value = 4e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672918Echinochloa crusgalliSetaria viridis20.2238.4187.3126forward
CNT30520861Echinochloa crusgalliSetaria italica22.3118.8186.33139forward
CNT308353Echinochloa crusgalliZea mays35.7921.2482.51223forward
CNT30151238Echinochloa crusgalliBrachypodium distachyon21.3516.2484.96133forward
CNT30556876Echinochloa crusgalliPanicum hallii23.1150.5391.67144forward

Expression of CNT30582550

Peptides detected in this lncRNA

>peptide 1 (85 aa)
MVCSCRLCLGTAGRLLGARGLVGDETDALRLPDVVESKDTDVAIREVLTEHEPDLAELEAGNPVVADQVVDLLQEFLLGQRRQVR*

Sequence

>CNT30582550
CGGCCACGTCACATGTCATATCATTCTGTCACGTCATTAGGCACATGGCAACTCTGGAGACAAATACTTTGTGACATTTCAGTTTGACATTTATGACGAT
TTGGATCGTCATAGATGTTTTGTGAGGATGATGTGTTTGTCACTAACGTACTTATGACGTTTTTTTAAGTGTTTCGTCACAGAAGGTGCTGAGACAGGGA
CCTTCTATGACGATGACATTTTTGTCATGGAGACGTCATAATTCACACAATGTGACAAAACCATATCACAGAAGATAACATGTGTTGTAGTGAGGTGACC
CCAAGCAAAAACCCAACAAACACTTAATGGTTTGCTCATGCAGGCTGTGTTTAGGCACCGCCGGTCGTCTACTCGGAGCTCGGGGGCTTGTAGGCGATGA
AACTGACGCACTGCGTCTGCCTGATGTTGTCGAATCCAAGGACACGGATGTAGCAATCAGGGAAGTTCTCACGGAACACGAACCCGATCTTGCTGAACTC
GAGGCAGGGAACCCAGTTGTTGCGGATCAGGTAGTCGATCTGCTTCAAGAGTTCCTCCTGGGTCAGCGGCGGCAGGTACGATAGGGTCTCGAACTTCTTG
TTGTTCTCGACAGGCCAAATCTG