Detailed information on CNT30582523


BLAST search results

BLAST vs Swiss-Prot:
sp|P27497|CB29_MAIZE, E-value = 2e-134

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695874Echinochloa crusgalliOryza sativa56.6655.0190.63587forward
CNT30455809Echinochloa crusgalliSaccharum spontaneum56.2753.5490.74583forward
CNT30575045Echinochloa crusgalliOryza barthii56.0861.5590.53581forward

Expression of CNT30582523

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MVTRASPKRDDGTFTALPAKAVEERAMVLVAIALLTPRCLVVDEVVRLADGLRCLETTKVFK

>peptide 2 (87 aa)
MVQTETRARSHPDTLQHIQQFGINASLAGHEVGGVGPGIVVDGVGEVVGKPNMENMARRPFLSSLTLSSAKASGSSARPSGSKLPPG*

>peptide 3 (32 aa)
GLCTHAIAQANQRLKAKKKDELGWTGYNTIRQ*

>peptide 4 (51 aa)
WVVHARDCSSKSTVESKEKRRAGLDGIQYNQTMNAAIPSRLNPRNLHHGTN*

>peptide 5 (29 aa)
MAQREWMTSSSRFLAKVSGSADSPAVSQP*

Sequence

>CNT30582523
CTGGGTTGTGCACGCACGCGATTGCTCAAGCAAATCAACGGTTGAAAGCAAAGAAAAAAGACGAGCTGGGTTGGACGGGATACAATACAATCAGACAATG
AACGCTGCAATTCCTTCTCGGTTGAACCCTCGTAATTTACACCATGGTACAAACTGAAACCAGGGCGCGCTCACATCCGGACACCCTACAGCATATCCAA
CAGTTTGGGATCAACGCCTCACTTGCCGGGCACGAAGTTGGTGGCGTAGGCCCAGGCATTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCAAGCCGAACA
TGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTGACCTTGAGCTCAGCGAAGGCCTCTGGGTCGTCGGCCAGGCCGAGCGGGTCGAAGCTGCCGCC
GGGGTAGAGCGGGTCGACGACCTCGCCGAGCGGGCCGCCGGCAATGCGGTAGCCCTCGACGGCGCCCATGAGCACGACCTGGCAGGCCCAGATGGCGAGA
ATGCTCTGCGCGTGGATCAGGCTCGGGTTGCCGAGGTAGTCAAGGCCGCCCTCGCTGAAGATCTGGGAGCCCGCCTTGAACCAGACGGCCTCGCCGAACT
TGACGCCGTTGCGGGCGAGCAGCTCGGGGAAGACGCAGCCGAGCGCGCCGAGCATGGCCCAGCGGGAGTGGATGACCTCCAGCTCGCGGTTCTTGGCGAA
GGTCTCGGGGTCGGCGGACAGCCCGGCGGTGTCCCAGCCGTAGTAGCTCGGGGGCTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCTGGGCCGTAC
CACGGGCTGCCGGAGGCGGCCGGCTTGGGCTTCGCCGCGGTCTTGCGCATGGTCACGCGGGCCTCGCCGAAGAGAGACGATGGCACGTTCACGGCCTTGC
CGGCGAAGGCCGTGGAGGAGAGGGCCATGGTGCTGGTCGCCATTGCGCTGCTAACACCGAGGTGTCTTGTGGTTGATGAAGTGGTGAGACTCGCAGATGG
CTTGAGATGTCTGGAGACGACCAAGGTATTTAAAGC