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Detailed information on CNT30582488


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697843Echinochloa crusgalliOryza sativa99.7538.6599.671211reverse complement
CNT30678576Echinochloa crusgalliSetaria viridis28.8369.1797.43350reverse complement
CNT30524653Echinochloa crusgalliSetaria italica44.5645.16100541forward
CNT30548882Echinochloa crusgalliIpomoea triloba81.7137.6398.89992forward
CNT30378671Echinochloa crusgalliArabidopsis thaliana12.4453.5598.68151reverse complement
CNT30632593Echinochloa crusgalliVigna unguiculata82.2159.1297.9998forward
CNT30504983Echinochloa crusgalliNicotiana attenuata31.3820.9299.21381forward
CNT30635645Echinochloa crusgalliCapsicum annuum33.9466.5692.96412forward
CNT30304298Echinochloa crusgalliTriticum aestivum98.3545.1299.51194reverse complement
CNT30221494Echinochloa crusgalliHordeum vulgare65.5764.0999.62796forward
CNT30400948Echinochloa crusgalliTriticum turgidum98.3547.7699.661194reverse complement
CNT30569653Echinochloa crusgalliActinidia chinensis26.0347.0996.84316reverse complement
CNT30585815Echinochloa crusgalliMusa acuminata81.8840.9695.98994forward
CNT30234810Echinochloa crusgalliBrassica oleracea46.4674.594.15564reverse complement
CNT30553653Echinochloa crusgalliOryza glaberrima20.4312.7598.39248forward
CNT30147394Echinochloa crusgalliMedicago truncatula82.045098.49996forward
CNT30440683Echinochloa crusgalliAegilops tauschii64.6681.2699.87785forward
CNT30248040Echinochloa crusgalliAvena sativa64.2557.9598.97780reverse complement
CNT30662061Echinochloa crusgalliTriticum dicoccoides97.2861.5499.661181reverse complement
CNT3081478Echinochloa crusgalliBrassica juncea61.264.1695.02743forward
CNT30460491Echinochloa crusgalliSaccharum spontaneum4.0424.2693.8849forward
CNT30143344Echinochloa crusgalliLolium perenne99.7554.141001211reverse complement
CNT3016633Echinochloa crusgalliZea mays100.9164.197.881225reverse complement
CNT30229838Echinochloa crusgalliAnanas comosus36.4910098.42443reverse complement
CNT30218527Echinochloa crusgalliKalanchoe fedtschenkoi61.750.399.2749reverse complement
CNT3067373Echinochloa crusgalliLeersia perrieri23.0692.7299.64280forward
CNT30655299Echinochloa crusgalliRosa chinensis81.6334.9298.89991forward
CNT30203595Echinochloa crusgalliHelianthus annuus82.6254.7597.011003forward
CNT30689128Echinochloa crusgalliTriticum urartu98.3564.2399.161194forward
CNT30721611Echinochloa crusgalliTriticum spelta18.4548.5999.55224reverse complement
CNT30595506Echinochloa crusgalliOryza meridionalis28.4231.36100345reverse complement
CNT30369805Echinochloa crusgalliOryza glumipatula79.2467.0997.4962forward
CNT30154718Echinochloa crusgalliPrunus persica39.0468.493.67474forward
CNT30420891Echinochloa crusgalliPapaver somniferum48.621.9792.71590reverse complement
CNT30318721Echinochloa crusgalliAsparagus officinalis6.1830.2486.6775forward
CNT3037914Echinochloa crusgalliCucumis melo34.119.4589.61414forward
CNT30147862Echinochloa crusgalliBrachypodium distachyon11.8654.75100144reverse complement
CNT30104648Echinochloa crusgalliOryza rufipogon38.3979.9398.93466reverse complement
CNT30575706Echinochloa crusgalliOryza barthii7939.3597.5959forward
CNT30495774Echinochloa crusgalliDigitaria exilis32.3799.24100393reverse complement
CNT30116696Echinochloa crusgalliOryza nivara99.7530.5499.751211reverse complement
CNT30604605Echinochloa crusgalliOryza punctata7.0837.2391.8686reverse complement

Expression of CNT30582488

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MLSKPIHLSETEESGISCVGVKSVDLRRNAKSEGSSLGPYRRWGAKAWGANRIRYPGSPCRKR*

>peptide 2 (42 aa)
MMLSWSFRMISHTGTETRPGLPRGAAVGNLGQWAKARSSNIA*

>peptide 3 (40 aa)
MTGLEEEAPANSVPAAAVRRGGQVFFGMTGRKGHVGGESG*

>peptide 4 (35 aa)
MQVERCFRGAGQKEKRLLAKVVSPCFKTTGRALRL*

Sequence

>CNT30582488
CTACCACTGTTCGGCCCAATCATAGTCAAAATCTGAGTTTGATCCTGGCTCAGAAGGAACGCTAGCTATATGCTTAACACATGCAAGTCGAACGTTGTTT
TCGGGGAGCTGGGCAGAAGGAAAAGAGGCTCCTAGCTAAAGTTGTCTCGCCCTGCTTCAAAACTACAGGGCGCGCGCTACGGCTTTGACCTAACGGCCTC
CGTTTGCTGGAATCGGAATAGTTGAGAACAAAGTGGCGAACGGGTGCGTAACGCGTGGGAATCTGCCGAACAGTTCGGGCCAAATCCTGAAGAAAGCTCA
AAAGCGCTGTTTGATGAGCCTGCGTAGTATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGGATGATCAGCCAC
ACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGGAATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGA
AGGGCAATGCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGA
CGGGGGGGGCAAGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTGAAAGTCGCCAAAAAGTGGCGGAATGCTCT
CGAAACCAATTCACTTGAGTGAGACAGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGTAGATCTACGAAGGAACGCCAAAAGCGAAGGCAGCTC
TCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGAGTGTTCGCCCTTGGT
CTACGCGGATCAGGGGCCCAGCTAACGCGTGAAACACTCCGCCTGGGGAGTACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGC
GGTGGAGCATGTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACATATGAACAACAAAACCTGTCCTTAACGGGATGGTACTGACTTTC
ATACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCTCGTTTTGTGTTGCTGAGACATGCGCC
TAAGGAGAAATCGC