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Detailed information on CNT30582414


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672548Echinochloa crusgalliSetaria viridis69.0964.7291.44409forward
CNT30521214Echinochloa crusgalliSetaria italica41.3933.3395.92245forward
CNT3094368Echinochloa crusgalliSolanum tuberosum9.4621.6287.556forward
CNT30438727Echinochloa crusgalliAegilops tauschii33.1162.0389.8196forward
CNT30249690Echinochloa crusgalliAvena sativa68.9266.7886.52408forward
CNT30662078Echinochloa crusgalliTriticum dicoccoides33.4568.2888.38198forward
CNT30344811Echinochloa crusgalliEragrostis tef61.6665.387.95365forward
CNT30104607Echinochloa crusgalliOryza rufipogon18.2430.0895.37108forward

Expression of CNT30582414

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MHPSMCMQRKVYFIHVLTAQSTTTWIVYLKKYGRSST*

>peptide 2 (94 aa)
MDRLLEEVREVEHVEEEVCPEHAGDSAEEESSGELGPAVGGLQLASPSLKEATPYMVRQTLRMVTSPAAPRAPAWPCTAVFRSGPVRAKGPTRR*

Sequence

>CNT30582414
GCCCAGGAATGAATGAAGAGTCTACAATACAACACTAGTTAATTAATTGTTTTTGTCCCCAAAGTAGATTAACACTCCATCCAAGTAAGAAATTAACAGT
TCCAAAAGTTACAGCCCCATCCATGCATCCATCCATGTGCATGCAGAGAAAAGTATATTTTATACACGTGCTCACTGCTCAATCAACAACCACATGGATC
GTCTACTTGAAGAAGTACGGGAGGTCGAGCACGTAGAGGAGGAAGTATGCCCAGAGCACGCCGGAGATTCCGCCGAAGAAGAATCCTCCGGTGAACTTGG
CCCAGCCGTCGGCGGTCTGCAGCTTGCCTCCCCCTCGTTGAAGGAGGCGACGCCGTACATGGTGAGGCAGACGCTGAGGATGGTGACGAGCCCGGCGGCG
CCCAGGGCGCCGGCCTGGCCGTGCACGGCCGTGTTCCGGAGCGGGCCGGTGAGGGCGAAGGGCCCGACGAGGAGGTAGCCGTGCGCGAGGCCCACCTCGA
TGCCCCGGAGCAGCGGGCTCACGGCGGTGCGGTAGGCCGGCAGGTTGGAGAGGTACCAGGCGATGAGCGGGCTGGAGGTGATGGGCGTCTCC