Detailed information on CNT30582309


BLAST search results

BLAST vs Swiss-Prot:
sp|P20121|PSAH_PEA, E-value = 5e-10

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673389Echinochloa crusgalliSetaria viridis28.4129.6796.85127forward
CNT30532753Echinochloa crusgalliEucalyptus grandis15.4427.8286.9669forward
CNT30367799Echinochloa crusgalliSorghum bicolor32.2122.1292.36144forward
CNT30604128Echinochloa crusgalliOryza punctata30.4346.990.44136forward

Expression of CNT30582309

Peptides detected in this lncRNA

>peptide 1 (39 aa)
RGRPLVMKPNCYIFLIGSLILYDLLVDNSAISIVCQSTI*

>peptide 2 (88 aa)
MVSGASSTSKLDKWGRKLDLDLAARARLRRLLRPLLDRQEVPLPGGVGDVFEVEVDALVAVLGHHGGGAGPADGAASGAGRRPDGELPA

Sequence

>CNT30582309
ACGGGGTAGGCCATTAGTGATGAAGCCAAATTGTTATATCTTTCTTATAGGTTCATTGATACTATACGATCTTCTTGTGGATAACAGCGCCATTTCAATT
GTATGCCAGAGTACAATATGAACATCATATCAGAAGCAGGCAGAGATCGAATATCAACAGCATAACAGGCAGGGATACATGGTGTCCGGAGCTAGCAGTA
CAAGCAAGCTAGACAAGTGGGGCAGGAAACTTGACTTAGATCTTGCCGCGCGGGCCCGGCTGCGGCGGCTGCTGCGGCCCCTTCTTGATCGGCAGGAGGT
CCCACTGCCCGGTGGTGTTGGCGATGTCTTCGAGGTCGAAGTAGACGCTCTTGTCGCCGTACTTGGCCACCACGGCGGCGGAGCGGGGCCTGCGGACGGA
GCGGCAAGCGGCGCGGGACGACGACCTGACGGCGAGCTTCCTGCCGG