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Detailed information on CNT30582252


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672683Echinochloa crusgalliSetaria viridis41.2744.395.96272forward
CNT30520857Echinochloa crusgalliSetaria italica33.5423.4195.48221forward
CNT30533956Echinochloa crusgalliEucalyptus grandis25.9524.583.63171forward
CNT30629841Echinochloa crusgalliVigna unguiculata28.2231.7983.87186forward
CNT30292923Echinochloa crusgalliTriticum aestivum32.0292.5491.94211forward
CNT30222283Echinochloa crusgalliHordeum vulgare20.7932.6291.24137forward
CNT30390478Echinochloa crusgalliTriticum turgidum41.1222.7388.93271forward
CNT30247486Echinochloa crusgalliAvena sativa41.4345.8193.04273forward
CNT304588Echinochloa crusgalliZea mays26.2513.4195.95173forward
CNT30129085Echinochloa crusgalliCorymbia citriodora25.9516.2484.21171forward
CNT30683149Echinochloa crusgalliTriticum urartu34.951.9290.43230forward
CNT30556995Echinochloa crusgalliPanicum hallii39.6137.1396.55261forward

Expression of CNT30582252

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MVTSPAAPRAPAWPCTAVFRSGPVRAKGPTRR*

>peptide 2 (37 aa)
MHPSMCMQRKVYFIHVLTAQSTTTWIVYLKKYGRSST*

>peptide 3 (42 aa)
MDRLLEEVREVEHVEEEVCPEHAGDSAEEESSGELGPAVGGW*

>peptide 4 (37 aa)
MSGLEVMGVSRLPMKGSPLMGCTTWYVGCATTYIDKYQ

Sequence

>CNT30582252
CTACTGAAAAACTAAAAGCCCATTGATCCTAAGAAAATAATAAGCTGCCCAGGAATGAATGAAGAGTCTACAATACAACACTAGTTAATTAATTGTTTTT
GTCCCCAAAGTAGATTAACACTCCATCCAAGTAAGAAATTAACAGTTCCAAAAGTTACAGCCCCATCCATGCATCCATCCATGTGCATGCAGAGAAAAGT
ATATTTTATACACGTGCTCACTGCTCAATCAACAACCACATGGATCGTCTACTTGAAGAAGTACGGGAGGTCGAGCACGTAGAGGAGGAAGTATGCCCAG
AGCACGCCGGAGATTCCGCCGAAGAAGAATCCTCCGGTGAACTTGGCCCAGCCGTCGGCGGATGGTGACGAGCCCGGCGGCGCCCAGGGCGCCGGCCTGG
CCGTGCACGGCCGTGTTCCGGAGCGGGCCGGTGAGGGCGAAGGGCCCGACGAGGAGGTAGCCGTGCGCGAGGCCCACCTCGATGCCCCGGAGCAGCGGGC
TCACGGCGGTGCGGTAGGCCGGCAGGTTGGAGAGGTACCAGGCGATGAGCGGGCTGGAGGTGATGGGCGTCTCCAGGCTGCCGATGAAGGGGTCGCCGTT
GATGGGCTGCACCACCTGGTACGTTGGCTGCGCAACAACATATATAGACAAGTATCAGA