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Detailed information on CNT30582206


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG87|RS272_HORVU, E-value = 3e-67

BLAST vs NONCODE:
NONSTUT000620, E-value = 8e-22

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30586129Echinochloa crusgalliMusa acuminata36.360.5391.93322forward
CNT30435195Echinochloa crusgalliAegilops tauschii27.8542.6697.17247forward
CNT3067544Echinochloa crusgalliLeersia perrieri27.8515.0296.36247forward
CNT30719751Echinochloa crusgalliTriticum spelta27.8542.7397.57247forward

Expression of CNT30582206

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MVAKTEGQSNRTNCVCYLIIAKLPKKYNSQARHEMETKLNSHHISSVTGVPRR*

>peptide 2 (29 aa)
MKVPAPQSALGHSLRRRSTRWRVDSFWML*

>peptide 3 (63 aa)
MSRCWSGGMPSLSWILAFTLSMVSEDSTSNVMVFPVRVFTKICILAAVGGRLRAAAAETAAAG*

Sequence

>CNT30582206
GTGCAACCAATTGATCCACGATCAAAGAACAACATAATACACCGTCATTAGCAGATATTCAGTAGGGGCTATCTGCTGAAGCAATGTTAATGGCAGTCAT
AATTATCAAACCACATTCTATTATCGAATAGAATACCAGGCCATTCGAAATTCTAATATCTGCCTATTCCATCATAATAATCATATGGTCGCAAAAACAG
AGGGGCAATCTAATCGAACAAACTGTGTATGCTATCTAATCATAGCGAAATTGCCAAAAAAATATAATAGTCAAGCAAGGCATGAAATGGAAACAAAATT
AAACTCGCATCACATCAGCTCAGTAACAGGCGTTCCAAGAAGATAACACTGCTACTCCATTTAAGTTTCAATCTCAAGACAGATCTAAATGATATTCAAT
TCGAGTAACCAACAGCTCGATTCATGATAGGTAGGCGGGTAAAGCTAAGCAAAGCGATGCAACCAATTACGCCTTCTGGTTGTAGACGTAGGTGAGGCCG
CACTTGCCGCAGTAGTGGCGGTCGAAGTGGTTGGCCATGAAGGTGCCCGCGCCGCAGTCGGCGTTGGGGCACTCCTTGCGGAGGCGGAGCACCAGGTGGA
GGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGTCGCTGCTGGTCCGGCGGGATGCCCTC
CTTGTCCTGGATCTTGGCCTTCACGTTATCGATGGTGTCCGAGGACTCCACCTCCAACGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATC
TTGGCGGCGGTGGGAGGTCGCCTCCGCGCAGCGGCGGCGGAGACTGCGGCGGCTGGGTAGGGTTTGCGCGCGGCGGGGTGGGGGCGG