Detailed information on CNT30582166


BLAST search results

BLAST vs Swiss-Prot:
sp|P23802|NLTP_ELECO, E-value = 4e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697916Echinochloa crusgalliOryza sativa23.7620.8482.55149forward
CNT30676294Echinochloa crusgalliSetaria viridis11.9629.1897.3375forward
CNT30524109Echinochloa crusgalliSetaria italica50.470.5481.33316forward
CNT30555577Echinochloa crusgalliOryza glaberrima10.2123.190.6264forward
CNT30471439Echinochloa crusgalliSaccharum spontaneum11.9628.210075forward
CNT30367564Echinochloa crusgalliSorghum bicolor24.5626.7888.96154forward
CNT30371496Echinochloa crusgalliOryza glumipatula11.9625.179675forward
CNT30104730Echinochloa crusgalliOryza rufipogon11.9621.879675forward
CNT30578036Echinochloa crusgalliOryza barthii11.9625.179675forward
CNT30118027Echinochloa crusgalliOryza nivara11.9620.2794.6775forward

Expression of CNT30582166

Peptides detected in this lncRNA

>peptide 1 (40 aa)
AVGGGADGVGDADAALGGDAGGVAGSCRRCAGRRWCWPGS*

>peptide 2 (35 aa)
MIQYGYDAAYCCVTCIIDRVAGHGSSFSRRWSSVDP

>peptide 3 (95 aa)
MLTPHLEGMLAALPAVAGGAPVGGGAGLGVEAPDAAAAAGRGARPLTAGVAEAGPDGGAHLTAGDGRLGCRRCAQEHHRGNHGEHHKLSTSHGSS*

>peptide 4 (32 aa)
MGTMPPTVVLHASSIEWPAMAAVSVVGGVVWIH

Sequence

>CNT30582166
GCAGTCGGTGGAGGTGCTGATGGTGTAGGGGATGCTGACGCCGCACTTGGAGGGGATGCTGGCGGCGTTGCCGGCAGTTGCAGGCGGTGCGCCGGTCGGC
GGTGGTGCTGGCCTGGGAGTTGAGGCTCCTGACGCCGCTGCAGCAGCTGGCCGAGGGGCCCGACCCCTGACCGCGGGCGTAGCTGAGGCAGGGCCCGATG
GCGGAGCTCACCTGACCGCAGGAGATGGCCGCCTCGGATGTCGTCGCTGCGCCCAGGAGCACCACCGCGGCAACCACGGCGAGCACCACAAGCTGAGCAC
GAGCCATGGCTCTAGTTAGCAAGCGTGTGGCGAGATCGATGGATGGATGTGGCCGCCGATCGACTGGGAATGAAAGAGTATGCTGGTGAGTGCAAGGTGT
AGTGCTCAGCTCGCTGATGGTGTGAGGAGGGAGTGCAAGGGAATGTTGGTCCTTAAATAGACGATCGAGTAGCTAAGCTCAGCTAGCTTGGTGTCGTGTC
GAGCTGAGTGCTGCTGAATGATACAGTATGGGTACGATGCCGCCTACTGTTGTGTTACATGCATCATCGATCGAGTGGCCGGCCATGGCAGCAGTTTCAG
TCGTCGGTGGAGTAGTGTGGATCCATG