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Detailed information on CNT30582047


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30462400Echinochloa crusgalliSaccharum spontaneum45.4821.4585.96292forward
CNT30365623Echinochloa crusgalliSorghum bicolor42.0624.1986.67270forward

Expression of CNT30582047

Peptides detected in this lncRNA

>peptide 1 (61 aa)
SQVPKFVYNNMQNFVVTKSTGHIKICLLDFVGKIQREADRQSSHNSSKPCKNTVTRFHIFT*

>peptide 2 (85 aa)
MPSLASAASPSLLYLPSCARELALARSSSASCAALTFSGRCSAVPWRRRRTHAMGWGSGSWRSGSWSPQPQTAHQTGTACNFCFFW

>peptide 3 (34 aa)
MPWVGALVHGVQVLGRLNLRLPTRQELHAIFVFFG

Sequence

>CNT30582047
ATCCCAGGTACCAAAATTTGTGTATAATAATATGCAAAACTTTGTAGTAACCAAATCCACAGGCCACATAAAGATTTGTCTGCTCGACTTTGTCGGTAAA
ATACAGAGAGAGGCAGATCGACAAAGCTCACACAACTCTAGCAAACCATGCAAAAATACAGTAACCCGATTCCATATTTTCACTTAGGATAGTAATTAAA
ACTGCATGCAGTGTGTACCATCTAAACCTGTAATGGCACACTGCCTACGGTGCCCTCGAGGTTGGTACTAGCAGCGAGCTTAGTATCATCATCATCGTCT
TAATAGACGTAGTACGATCTTGACGAACAATCATGCCCTCGATCATTGGCCGTACGTCTTAGTAGACGTAGTTCTTGACGAACATGCCCTCATTGGCCTC
GGCGGCCTCGCCGTCGCTGCTGTACTTGCCGAGCTGCGCCAGGGAGTTGGCCTTGGCACGCAGCAGCAGCGCGTCCTGCGCCGCCTTGACGTTCTCCGGC
CGGTGTTCTGCAGTGCCCTGGCGTAGGAGAAGGACACATGCCATGGGTTGGGGCTCTGGTTCATGGCGTTCAGGTTCTTGGTCGCCTCAACCTCAGACTG
CCCACCAGACAGGAACTGCATGCAATTTTTGTTTTTTTTGGC