« Back to Echinochloa crusgalli search


Detailed information on CNT30581942


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF89|CB5_ARATH, E-value = 9e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697171Echinochloa crusgalliOryza sativa15.9121.3910074forward
CNT30677300Echinochloa crusgalliSetaria viridis27.3113.7496.85127forward
CNT30524453Echinochloa crusgalliSetaria italica38.2824.4296.07178forward
CNT30297025Echinochloa crusgalliTriticum aestivum15.9128.0397.374forward
CNT30438887Echinochloa crusgalliAegilops tauschii10.1120.4395.7447forward
CNT30662842Echinochloa crusgalliTriticum dicoccoides26.6722.1889.52124forward
CNT30465769Echinochloa crusgalliSaccharum spontaneum29.2523.6591.91136forward
CNT302540Echinochloa crusgalliZea mays35.2723.3390.85164forward
CNT30216944Echinochloa crusgalliKalanchoe fedtschenkoi25.5916.982.35119forward
CNT30353506Echinochloa crusgalliEragrostis tef55.052792.19256forward
CNT30365046Echinochloa crusgalliSorghum bicolor36.7717.7692.4171forward
CNT30597089Echinochloa crusgalliOryza meridionalis21.9413.291.18102forward
CNT30371232Echinochloa crusgalliOryza glumipatula26.6711.7392.74124forward
CNT30151052Echinochloa crusgalliBrachypodium distachyon11.1822.4190.3852forward
CNT30498473Echinochloa crusgalliDigitaria exilis50.5455.9588.09235forward
CNT30117889Echinochloa crusgalliOryza nivara25.5921.0693.28119forward
CNT30558778Echinochloa crusgalliPanicum hallii17.8521.0189.1683forward

Expression of CNT30581942

Peptides detected in this lncRNA

>peptide 1 (97 aa)
MRRHCSPAGVHLLLQAGRPLGGAGDDGEQVVAEGVAEVLGEAQRVERAARVELVLKVQPVDDPVVLGAADEHHLGDDGHHQVDGDAVAEVVEGVAVQE

>peptide 2 (88 aa)
MAHSSDPHTRTHCLPVQSNAAAAAACVAIALRPACTYSYRLGVLSAAPEMTVSRLLPKGSLRCLARPNGSNGPPGWSLSSRSSPLMIR*

>peptide 3 (61 aa)
MVSFLPLDNLHAWHILQTLTHAHIASRYNQTQQLLLHASPLLSGRRALTLTGWASSRRRRR*

Sequence

>CNT30581942
ATACTCCGTAAGTAGCATGTCTCTGGCACAAATTCAAGCAGAATCAGAGATCAGAACGAAATATGGTTTCTTTCCTCCCTCTTGATAATTTACACGCATG
GCACATTCTTCAGACCCTCACACACGCACACATTGCCTCCCGGTACAATCAAACGCAGCAGCTGCTGCTGCATGCGTCGCCATTGCTCTCCGGCCGGCGT
GCACTTACTCTTACAGGCTGGGCGTCCTCTCGGCGGCGCCGGAGATGACGGTGAGCAGGTTGTTGCCGAAGGGGTCGCTGAGGTGCTTGGCGAGGCCCAA
CGGGTCGAACGGGCCGCCCGGGTGGAGCTTGTCCTCAAGGTCCAGCCCGTTGATGATCCGGTAGTACTCGGCGCCGCCGACGAGCACCACCTCGGCGATG
ACGGCCACCACCAGGTTGATGGGGATGCTGTTGCCGAAGTAGTTGAGGGTGTTGCCGTCCAGGAG