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Detailed information on CNT30581883


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524056Echinochloa crusgalliSetaria italica45.4223.8487.6258forward
CNT30708916Echinochloa crusgalliGlycine max16.7339.4284.2195forward
CNT30439071Echinochloa crusgalliAegilops tauschii16.3727.8483.8793forward
CNT30217659Echinochloa crusgalliKalanchoe fedtschenkoi17.9635.0585.29102forward
CNT30345066Echinochloa crusgalliEragrostis tef50.3551.8184.62286forward
CNT30570222Echinochloa crusgalliVitis vinifera20.623.4587.18117forward
CNT30578122Echinochloa crusgalliOryza barthii22.5416.2493.75128forward

Expression of CNT30581883

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MPWVGALVHGVQVLGRLNLRLPTRQELQFLFLFFLAQN

>peptide 2 (88 aa)
MPSLASAASPSLLYLPSCARELALARSSSASCAALTFSGRCSAVPWRRRRTHAMGWGSGSWRSGSWSPQPQTAHQTGTAIFVFVFFGAK

>peptide 3 (37 aa)
TTLANHAKIQDRQIDKAHTTLANHAKYSNPIPYFHLG*

>peptide 4 (28 aa)
MAFRFLVASTSDCPPDRNCNFCFCFFWRK

Sequence

>CNT30581883
CACAACTCTAGCAAACCATGCGAAAATACAAGACAGGCAGATCGACAAAGCTCACACAACTCTAGCAAACCATGCAAAATACAGTAACCCGATTCCATAT
TTTCACTTAGGATAGTAAAACTGCATGCAGTGTACCATCTAAACCTGTAATGGCACACTGCCTACATACGGTGCCCTCGAGGTTGGTACTAGCAGCGAGC
TTAGTATCATCATCATCGTCTTAATAGACGTAGTTCGATCTTGACGAACAATCGTGCCCTCATTGGCCGTACGTCTTAGTAGACGTAGTTCTTGACGAAC
ATGCCCTCATTGGCCTCGGCGGCCTCGCCGTCGCTGCTGTACTTGCCGAGCTGCGCCAGGGAGTTGGCCTTGGCACGCAGCAGCAGCGCGTCCTGCGCCG
CCTTGACGTTCTCCGGCCGGTGTTCTGCAGTGCCCTGGCGTAGGAGAAGGACACATGCCATGGGTTGGGGCTCTGGTTCATGGCGTTCAGGTTCTTGGTC
GCCTCAACCTCAGACTGCCCACCAGACAGGAACTGCAATTTTTGTTTTTGTTTTTTTTGGCGCAAAAT