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Detailed information on CNT30581754


BLAST search results

BLAST vs Swiss-Prot:
sp|Q09020|PR4_PHAVU, E-value = 3e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697140Echinochloa crusgalliOryza sativa7.3220.5992.8656forward
CNT30677435Echinochloa crusgalliSetaria viridis28.7652.0192.73220reverse complement
CNT30524561Echinochloa crusgalliSetaria italica61.4440.3491.06470forward
CNT30533654Echinochloa crusgalliEucalyptus grandis15.9524.985.25122forward
CNT30549812Echinochloa crusgalliIpomoea triloba18.5626.6480.28142forward
CNT30275526Echinochloa crusgalliChenopodium quinoa18.325.3682.86140forward
CNT30180424Echinochloa crusgalliSecale cereale19.6123.1888150forward
CNT30221624Echinochloa crusgalliHordeum vulgare20.2622.8687.1155forward
CNT30386243Echinochloa crusgalliTriticum turgidum19.6122.1688150forward
CNT3084841Echinochloa crusgalliVigna radiata16.3423.4181.6125forward
CNT30249706Echinochloa crusgalliAvena sativa19.6123.1589.33150forward
CNT30470142Echinochloa crusgalliSaccharum spontaneum53.254.4188.45407forward
CNT30135597Echinochloa crusgalliLolium perenne19.6129.0188150forward
CNT307034Echinochloa crusgalliZea mays53.3351.7184.31408forward
CNT30346089Echinochloa crusgalliEragrostis tef20.6528.1194.94158forward
CNT30597257Echinochloa crusgalliOryza meridionalis20.5231.4691.08157forward
CNT30371492Echinochloa crusgalliOryza glumipatula20.5229.2490.45157forward
CNT30108688Echinochloa crusgalliOryza longistaminata20.5227.9991.08157forward
CNT30104475Echinochloa crusgalliOryza rufipogon20.5227.9491.08157forward
CNT30578401Echinochloa crusgalliOryza barthii20.5228.0991.08157forward
CNT30118085Echinochloa crusgalliOryza nivara20.5229.491.08157forward
CNT3065513Echinochloa crusgalliSelaginella moellendorffii6.1420.795.7447reverse complement

Expression of CNT30581754

Peptides detected in this lncRNA

>peptide 1 (35 aa)
GLSPSRVHKPSAALRADHSFVAPALAGEEKGRTKP*

>peptide 2 (35 aa)
MNISGSDIHWTHGKTQCLFALFSLKPTLPIILAMS*

>peptide 3 (46 aa)
MIYDVNSPLFRSFLSQKGGADKRKMEEHKPKEQRPKASENKPVMNE*

>peptide 4 (45 aa)
ACLRRESTNLPLRSALTTASSHQRSPERRKGGRNPSSWRRRRRRR*

>peptide 5 (31 aa)
MIDNFWAAPPVTAVVVGTATCSASTLQLYSI*

Sequence

>CNT30581754
GGCCTGTCTCCGTCGCGAGTCCACAAACCTTCCGCTGCGCTCCGCGCTGACCACAGCTTCGTCGCACCAGCGCTCGCCGGAGAGGAGAAAGGGAGGACGA
AACCCTAGCTCGTGGCGGCGTCGGAGAAGGAGAAGATGATCTACGACGTGAACTCGCCCCTCTTCCGCTCCTTCCTCAGCCAGAAGGGCGGCGCCGACAA
GAGGAAAATGGAGGAGCATAAACCAAAGGAGCAGAGGCCCAAGGCCAGCGAGAACAAGCCAGTGATGAATGAATGAACATCTCCGGAAGCGACATTCATT
GGACGCACGGCAAAACTCAATGTCTGTTTGCTCTGTTTAGCTTGAAACCAACGCTTCCTATAATCTTAGCCATGTCTTAGTTTCCTCTTATAGTCTTAAT
CGCTCCGGTTGAATATGGTAACAGTGCAACGGACATGAAACTTGAACTACCTATGGGACTATGATGAATTTGAGACACCCATGATTGACAACTTTTGGGC
AGCCCCTCCTGTTACTGCCGTTGTGGTTGGTACAGCCACCTGCTCTGCATCTACCCTCCAACTTTATAGTATCTAGGGGCAGAGGAAGGTGTAAAGTGGT
GCTTAGGCCGGATCTTCGTCGGCTGCATTGCATGGAATCCGAAGCCTTTGAATCTGTTGTGTGGAATCATGGTCTGATTTGTTTTGGCTGATTGGGTCCC
TTAATTTCCGCTCGTTTGCTGTCGTTTTCGGCGTCAGTGTGTTGCATATGAATGTGAAAGTGTGG