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Detailed information on CNT30581659


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0IQF7|RS16_ORYSJ, E-value = 9e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696918Echinochloa crusgalliOryza sativa26.434.0789.41170forward
CNT30515426Echinochloa crusgalliJuglans regia28.2613.8585.16182forward
CNT30391876Echinochloa crusgalliTriticum turgidum9.7828.1292.0663forward
CNT30562499Echinochloa crusgalliActinidia chinensis12.8937.3990.3683forward
CNT3083687Echinochloa crusgalliVigna radiata28.1119.0381.22181forward
CNT30555554Echinochloa crusgalliOryza glaberrima29.1923.0189.89188forward
CNT30438780Echinochloa crusgalliAegilops tauschii28.7323.0487.57185forward
CNT30247768Echinochloa crusgalliAvena sativa28.7330.4387.03185forward
CNT30663140Echinochloa crusgalliTriticum dicoccoides29.0427.187.17187forward
CNT30472632Echinochloa crusgalliSaccharum spontaneum30.283.9991.28195forward
CNT30136796Echinochloa crusgalliLolium perenne28.7327.0987.57185forward
CNT30721366Echinochloa crusgalliTriticum spelta25.6232.185.45165forward
CNT30365247Echinochloa crusgalliSorghum bicolor27.9526.5186.67180forward
CNT30151249Echinochloa crusgalliBrachypodium distachyon16.320.1588.57105forward
CNT30117820Echinochloa crusgalliOryza nivara29.1924.189.89188forward
CNT30176592Echinochloa crusgalliVigna angularis28.1122.2183.43181forward

Expression of CNT30581659

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSKRFNSRLKVPNLKVKQQLDIVEPDKQLHR*

>peptide 2 (36 aa)
MTSGTWRGHHDHRTSSARTSWGRRRGGCGRSARRSP*

Sequence

>CNT30581659
AAAATTGAAATACTACTCATACTATTGCATGAATATAAGAAAACCGCATCAGAAATTCAGAATTCGTTGACATAGGTGACAAGCAAAACATACTTCAGAG
AATACAAAATCCCTCTCACTTTCATATCACAATGTCAAAACGGTTCAACAGTAGGCTTAAAGTTCCAAACTTGAAGGTAAAACAGCAGCTAGATATAGTA
GAACCAGATAAGCAGCTCCATAGATAGGAGACCAAGCCAGATCACCGGAAAGCAATCGCTCAACGGTATGACTTCTGGAACCTGGCGCGGGCACCACGAC
CACCGAACTTCTTCGGCTCGCACCTCCTGGGGTCGGCGACGAGGAGGGTGCGGTCGTAGCGCCCGAAGATCTCCTTGACCTCCTTCTTGGCGGCCTCGTC
GACATACTTCTGGAAGTAGGAGACGAGCGCCTTGGCGATGGCCTTCAGACGTAGCCCCTCCGGGCGGATGAGCTCAATCGGCGAGCCGTTCACCTTGATC
AGCCCGCGCCCCGGCTTGGTGTAGGCCACGGCCACCGCCGTCTTCTTGCGGCCGAAGCACTGGACGGTGCCCGGGGTCGGGCGGTTGAGGACGGCAGCCA
TGGTTGCGGTGGTGGCGGCTAGGGATCGCGGCGGCGGAGGAGGA