Detailed information on CNT30581642


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677151Echinochloa crusgalliSetaria viridis5.2249.7788.89108forward
CNT30104816Echinochloa crusgalliOryza longistaminata4.4921.7887.193forward

Expression of CNT30581642

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MFSSFALCCPRKDNRSLASLQASWTMLTSCLSGSSWILSAIFRASTRS*

>peptide 2 (52 aa)
LFTELHNFCFCGRTQNTPLFTELQVGNNVVQTVRTNIHQYFIASREVQDKRE*

>peptide 3 (60 aa)
MIAGARCRRGTPRPGLSSWRAGTLCIYRQRSRASPPILPGSPPTCSHRSRCAARVKTIDH*

>peptide 4 (62 aa)
MRCISIIHQLPQASKAVGIRRCKVYEQIIGLIINYFLFTGFGISSLLHETFKRFNLVIFIFF*

>peptide 5 (64 aa)
MSSTGYSNFGVALIPWCRVDRTLQRGQTVASHALYLHYSPTASSIQGGRNTEVQGLRTDHRAYY*

>peptide 6 (93 aa)
MVVVVAAAAVLSSPVGIIIEAGVMSSPWPPGGVTCIDASVALPLPPVGMRGEVSVVPLLLPLLLFVACFSCSSVLCIFSAMVSIPMYDSRSQM*

>peptide 7 (44 aa)
MDEVGDVSGGLARRHAPVLVQIVLANQQGCQLPDRLRLALLVAS*

>peptide 8 (42 aa)
MGTSKMTASMQPAASIRRTSIKLKHNVFNWLLKFWCSTNSLV*

>peptide 9 (37 aa)
MGTIVEIKDSQCKVTAPLIHVGRPHDHLVSQLKPLLC*

>peptide 10 (36 aa)
MMLSSNGLGKLLHISFSLPTPLCFRIHWPRLSLNAL*

Sequence

>CNT30581642
TTGTTTACAGAATTACACAATTTTTGTTTTTGCGGAAGGACCCAAAATACACCATTGTTTACAGAATTACAGGTAGGCAATAATGTGGTACAGACTGTAC
GTACAAACATACACCAGTATTTCATAGCTTCAAGGGAAGTACAAGACAAAAGGGAATGAGGTAAATACAACACCCGTATATACGTAGCAAAATGCATGCT
GGATAGAAACAAACCGAGGCAAATTGTATATAGATGGGAACTATAGTAGAGATTAAAGACTCCCAGTGCAAGGTAACTGCCCCGCTTATACATGTCGGAC
GTCCTCATGACCATTTGGTATCACAGCTAAAGCCTCTGCTGTGTTAACTCCACTTCCATGTGATAATTGGCACCGCCACGTATGGTCGTCGTAGTTGCAG
CTGCAGCCGTGCTATCATCACCGGTAGGCATCATAATTGAAGCTGGTGTAATGTCATCGCCGTGGCCACCAGGGGGCGTCACTTGCATAGATGCTTCCGT
GGCATTACCACTGCCACCGGTGGGTATGAGAGGTGAAGTTTCTGTGGTGCCACTATTGCTGCCGCTATTATTGTTTGTTGCTTGCTTCTCCTGCAGCTCT
GTCCTCTGCATCTTCTCCGCCATGGTCTCCATCCCCATGTATGATAGCAGGAGCCAGATGTAGGAGAGGTACTCCCCGCCCTGGCCTAAGCTCTTGGCGT
GCAGGTACCCTCTGCATCTACCGGCAGAGAAGCAGAGCATCTCCACCCATACTCCCTGGATCACCTCCCACATGTTCTCATCGTTCGCGTTGTGCTGCCC
GCGTAAAGACAATAGATCACTAGCGAGCCTCCAAGCATCATGGACGATGCTTACATCCTGTCTCTCCGGCTCTAGCTGGATATTATCGGCTATCTTCAGG
GCGAGCACACGTTCTTGATCCAACGCGGGCCGTGCACCACCCACTTGAGGATTAATCTCGAGCGTCAACCTAAGCTGCGTGTAGGCTTCTCTGAACAGGC
TGCGCCTAGCCCCGGTCATCAGCATCTCTGGGTTGACGAACAGCAGGTACACCACGTAGTTGGATATCTCCCTGCACCTCCAGGCGGCAGACGGGCCTAC
TGTGTAGAAGCAGAAGTCAGTGGCGAGGTGCCAGAGGATGATGCTCTCATCAAACGGCCTCGGCAAGCTCCTCCACATCTCCTTCTCCCTGCCGACCCCC
TTGTGCTTCAGGATCCACTGGCCGCGGTTGTCGTTGAACGCCCTGTAGGTGGCCGTGTCCTTTATGTGATTCATCGTCCACCCTTTATTGAGGTAGCCAT
GGACGAGGTTGGTGATGTCTCTGGAGGACTTGCACGCAGGCATGCACCAGTGCTGGTCCAGATAGTCCTTGCAAACCAGCAAGGTTGCCAGCTTCCGGAT
CGTCTTCGTCTTGCACTTCTTGTTGCGAGCTAAATACCATATTAGGTTGTACTGTGCTACTTGATCGGGCCACTGTGGCTGATCACCAGACCATCGATTA
ATTCTGATAAGTATCACAACAGGTATAAGGTACTCAAGACCAGCAGTACATGATAGCAATATGTATGTGATCCTGACATCAGTGTCGATAGCTCTTCCTT
GACTAATGGGCACTAGCAAAATGACTGCAAGCATGCAGCCAGCGGCTAGTATCCGTAGAACGTCTATAAAATTAAAACATAATGTCTTCAACTGGTTACT
CAAATTTTGGTGTAGCACTAATTCCTTGGTGTAGAGTCGATCGAACGTTGCAGAGAGGCCAGACTGTAGCAAGTCATGCGCTGTATCTCCATTATTCACC
AACTGCCTCAAGCATCCAAGGCGGTAGGAATACGGAGGTGCAAGGTCTACGAACAGATCATAGGGCTTATTATTAATTACTTTCTCTTCACTGGGTTCGG
CATTAGCAGCCTCCTGCACGAAACTTTCAAGAGATTTAATCTGGTCATTTTTATTTTCTTCTGATCCAGACGAGTCCACGAGGCTATTGATGCTAACTCT
CTTCAAATCCCATGGCTTCAGTATGCATTTTAGAATCCCTGGGACGAACAAGAGAACTGCTGCTGCCAG