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Detailed information on CNT30581628


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 2e-46

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676938Echinochloa crusgalliSetaria viridis67.8424.1494.4232forward
CNT30549212Echinochloa crusgalliIpomoea triloba33.043.7594.69113forward
CNT30730494Echinochloa crusgalliCorchorus capsularis33.0412.8494.69113forward
CNT30406993Echinochloa crusgalliBeta vulgaris26.3223.2695.5690reverse complement
CNT30526003Echinochloa crusgalliPhaseolus vulgaris34.2111.9599.15117forward
CNT30638870Echinochloa crusgalliCapsicum annuum28.657.3584.6998forward
CNT30226590Echinochloa crusgalliHordeum vulgare56.7395.198.45194forward
CNT30552690Echinochloa crusgalliOryza glaberrima47.9510.7199.39164forward
CNT30656195Echinochloa crusgalliTriticum dicoccoides33.0443.9798.23113reverse complement
CNT30600960Echinochloa crusgalliFraxinus excelsior23.989.0887.882forward
CNT30646904Echinochloa crusgalliRosa chinensis59.9473.7491.22205forward
CNT30346086Echinochloa crusgalliEragrostis tef24.2710.9589.1683forward
CNT30410483Echinochloa crusgalliPapaver somniferum57.899.6899.49198forward
CNT30642274Echinochloa crusgalliCannabis sativa33.0413.8391.15113reverse complement
CNT30149608Echinochloa crusgalliBrachypodium distachyon68.7120.3598.3235forward
CNT30104374Echinochloa crusgalliOryza rufipogon33.048.5198.23113reverse complement
CNT30576813Echinochloa crusgalliOryza barthii26.912.4897.8392forward
CNT30604623Echinochloa crusgalliOryza punctata26.0242.7994.3889forward

Expression of CNT30581628

Peptides detected in this lncRNA

>peptide 1 (39 aa)
GVAVTRPGRLFTKNTGLRKVVRPCMGADACPVPEGQGSW*

Sequence

>CNT30581628
GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGTAAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGG
AAGGTCAAGGAAGTTGGTGAACTGATGACAGGGAAGCCGGCGACCGAAGCCCCGGTGAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCC
TTGTCGGGTAAGTTCCGACCCGCACGAAAGGCGTAGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCAGGCCAGACGGACATTGGTACTCGA
GTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACTCACCCGTC