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Detailed information on CNT30581589


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670953Echinochloa crusgalliSetaria viridis34.4336.4100336forward
CNT30521002Echinochloa crusgalliSetaria italica34.5374.7297.92337reverse complement
CNT30637323Echinochloa crusgalliCapsicum annuum42.2129.1892.48412reverse complement
CNT3098505Echinochloa crusgalliSolanum tuberosum45.4945.2695.05444forward
CNT30220645Echinochloa crusgalliHordeum vulgare44.3695.894433forward
CNT30147387Echinochloa crusgalliMedicago truncatula56.1582.0494.89548forward
CNT30435015Echinochloa crusgalliAegilops tauschii89.6577.6496.57875forward
CNT3017904Echinochloa crusgalliZea mays94.1655.8398.59919forward
CNT30366518Echinochloa crusgalliSorghum bicolor31.9796.398.08312forward
CNT30360998Echinochloa crusgalliLactuca sativa29.7110098.97290reverse complement
CNT30323793Echinochloa crusgalliAsparagus officinalis20.864.2498.03203reverse complement
CNT30151602Echinochloa crusgalliBrachypodium distachyon37.9173.8599.46370forward
CNT3040451Echinochloa crusgalliMarchantia polymorpha18.5530.8393.37181reverse complement

Expression of CNT30581589

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MGDHWSDASGETNSQGVTGGVYRARVHIHRGMLIRDY*

>peptide 2 (36 aa)
YGYLVTTSPQSKTPPWYAPIRPPKAFVALVVHRSHG*

>peptide 3 (31 aa)
MFPSCREQSELRQSFRIRSALQPCFPLSLPL*

>peptide 4 (31 aa)
MVKFLLKAQLRAGTQSSSSAGTSLGSSAISP*

>peptide 5 (51 aa)
LRLPCYDFTPVEDPTVVCANKTTKGLCGTSGTQKSWVIIGPMLRAKPIPRV*

Sequence

>CNT30581589
CCTACGGCTACCTTGTTACGACTTCACCCCAGTCGAAGACCCCACCGTGGTATGCGCCAATAAGACCACCAAAGGCCTTTGTGGCACTAGTGGTACACAG
AAGTCATGGGTGATCATTGGTCCGATGCTTCGGGCGAAACCAATTCCCAGGGTGTGACGGGCGGTGTGTACAGGGCCCGGGTACATATTCACCGCGGCAT
GCTGATCCGCGATTACTAGCGATTTCAACTTCATGTTCCCGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGGATTCGCTCCGCCTTACAGCC
TTGCTTCCCATTGTCATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCATGCGGACTTGACGTCATCCCCACCTTCCTCCAGTATCTCACTG
GCAGTCCCTCGTGAGTGCGGCACGCACCTTTTTCTTTGTTTCGGAGCGGGGCGCGTACTATTACCACTACGTACCACACCACCGGGCGGCTGGCCTTCAT
GCCGAGTCTTCCTCCGCCGCCAACTCGACGTCGTCGTAACCAAGCCTAACCAAACCTCCATGCTCACTGGTACTTTGACGTCACTATAGGTAGGTCTCCG
TGGGTCTTGAGTTCGGCAAGACGACTTCGGTTCACACGTGAAAGTGCTTCGAAAGGCACCGGCTCCCAATGGTGAAATTCTTGCTGAAAGCACAGCTACG
TGCTGGCACTCAATCAAGTAGTAGCGCTGGCACGTCACTCGGCTCCTCGGCGATTTCTCCTTAGGCGCATGTCTCAGCAACACAAAACGAGGGTTTCGCT
CGTTATAGGACTTGACCAAACATCTCACGACACGAGCTGACGACAGCCATGCAGCACCTGTATGAAAGTCAGTACCATCCCGTTAAGGACAGGTTTTGTT
GTTCATATGTCAAGGGCTGGTAAGGTTTTGCGCGTTGTATCGAATTAAACCACATGCTCCACCGCTTGTGCAGGCC