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Detailed information on CNT30581397


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 8e-40

BLAST vs NONCODE:
NONGMAT001327, E-value = 2e-33

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696576Echinochloa crusgalliOryza sativa37.3148.5698.17219forward
CNT30670612Echinochloa crusgalliSetaria viridis34.415098.51202forward
CNT30522839Echinochloa crusgalliSetaria italica39.0139.1598.25229forward
CNT30317753Echinochloa crusgalliCorylus avellana27.4323.1384.47161forward
CNT30546681Echinochloa crusgalliIpomoea triloba24.8731.0686.3146forward
CNT30375418Echinochloa crusgalliArabidopsis thaliana10.927.1287.564forward
CNT30617135Echinochloa crusgalliSesamum indicum26.9215.7586.08158forward
CNT3069058Echinochloa crusgalliQuercus suber22.3214.9782.44131forward
CNT3042757Echinochloa crusgalliPrunus dulcis26.9226.0782.28158forward
CNT30186872Echinochloa crusgalliSecale cereale28.6233.6793.45168forward
CNT30288901Echinochloa crusgalliTriticum aestivum39.3549.1596.54231forward
CNT30220695Echinochloa crusgalliHordeum vulgare26.7536.0197.45157forward
CNT30387206Echinochloa crusgalliTriticum turgidum39.3541.496.54231forward
CNT30565712Echinochloa crusgalliActinidia chinensis35.0968.987.38206forward
CNT30554906Echinochloa crusgalliOryza glaberrima37.8238.4197.75222forward
CNT30441215Echinochloa crusgalliAegilops tauschii39.5241.8896.12232forward
CNT30239976Echinochloa crusgalliAvena sativa39.0145.4496.07229forward
CNT30664872Echinochloa crusgalliTriticum dicoccoides39.5249.3695.26232forward
CNT3082467Echinochloa crusgalliBrassica juncea28.4523.2980.84167forward
CNT30444399Echinochloa crusgalliSaccharum spontaneum28.7928.3697.04169forward
CNT30135596Echinochloa crusgalliLolium perenne39.0161.3993.01229forward
CNT3015042Echinochloa crusgalliZea mays39.5239.1996.98232forward
CNT30229571Echinochloa crusgalliAnanas comosus35.095094.17206forward
CNT30685043Echinochloa crusgalliTriticum urartu39.5252.1395.69232forward
CNT30348363Echinochloa crusgalliEragrostis tef28.6230.1696.43168forward
CNT30620798Echinochloa crusgalliCajanus cajan33.5637.7482.23197forward
CNT30596905Echinochloa crusgalliOryza meridionalis37.8236.5198.2222forward
CNT30357929Echinochloa crusgalliLactuca sativa27.9436.6181.1164forward
CNT30370989Echinochloa crusgalliOryza glumipatula26.9225.2898.1158forward
CNT30645368Echinochloa crusgalliCannabis sativa23.8542.383.57140forward
CNT30325970Echinochloa crusgalliAsparagus officinalis25.3821.5987.25149forward
CNT30148852Echinochloa crusgalliBrachypodium distachyon39.1851.894.78230forward
CNT30101875Echinochloa crusgalliOryza rufipogon39.0131.7698.25229forward
CNT30577582Echinochloa crusgalliOryza barthii37.8234.9198.2222forward
CNT30496126Echinochloa crusgalliDigitaria exilis28.6224.7195.83168forward
CNT30117527Echinochloa crusgalliOryza nivara37.8238.5498.2222forward

Expression of CNT30581397

Peptides detected in this lncRNA

>peptide 1 (66 aa)
RCTVQISIAKIKSLLRQTAKCRKFHGKLKISYISNQTNCFVLHPFPMTPKGPSEQLRLHYNYHKNT*

Sequence

>CNT30581397
GCGTTGCACAGTTCAAATATCAATTGCTAAGATTAAATCACTTCTGAGACAAACGGCAAAATGCCGTAAATTCCATGGTAAACTGAAGATTTCCTACATC
AGCAATCAGACCAATTGCTTCGTTTTACATCCATTCCCCATGACACCGAAAGGGCCAAGCGAACAGCTACGTCTCCACTACAACTACCACAAGAACACAT
GACGAGGCGACAAAGCTACCCATCGATCCGAAGCACCTCCACAGAACCCTAACCTAGCCGCCGAAGCCGTAGAGGGTGCGGCCCTGGCGCTTGAGCGCGT
AGACGACGTCCATGGCGGTGACGGCGTCGCGGATGACGTTCTCGAGGAAGATCTTGAGCACGCCGCGGGTCTCCTCGTAGATCAGCCCGGAGATGCGCTT
CACGCCGCCCCTCCTCGCCAGCCTCCGGATCGCCGGCTTCGTGATGCCCTGGATGTTGTCGCGGAGGACCTTCCGGTGACGCTTCGCGCCGCCCTTCCCG
AGCCCCTTGCCGCCCTTGCCCCTGCCCGACATCTCCGCCGCCGCCGCCGGCTCGCCTCCGCTTCGAAGTGGTGGGTGGTGGTTGGTG