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Detailed information on CNT30581381


BLAST search results

BLAST vs Swiss-Prot:
sp|Q07473|CB4A_ARATH, E-value = 2e-35

BLAST vs NONCODE:
NONBNAT002655, E-value = 1e-27

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30526451Echinochloa crusgalliPhaseolus vulgaris56.8314.9193.04158forward
CNT30708158Echinochloa crusgalliGlycine max56.8319.0684.81158forward
CNT30236263Echinochloa crusgalliBrassica oleracea53.630.6682.55149forward
CNT30554380Echinochloa crusgalliOryza glaberrima65.4716.4796.15182forward
CNT30262014Echinochloa crusgalliBrassica rapa42.8125.9383.19119forward
CNT30132672Echinochloa crusgalliLolium perenne58.2729.0390.74162forward
CNT30340460Echinochloa crusgalliEragrostis tef65.4721.4195.05182forward
CNT30478099Echinochloa crusgalliArabidopsis halleri55.7621.9280.65155forward
CNT30328621Echinochloa crusgalliAsparagus officinalis39.9337.2588.29111forward
CNT30496270Echinochloa crusgalliDigitaria exilis65.4718.4492.86182forward

Expression of CNT30581381

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MCSPRRPPTKPWLLMSTLLLGVLWVRWWCV

>peptide 2 (44 aa)
TLPASCQVTPVSHSTERAPRVASMAQRPWMSSHSRKRWRPKTSL*

>peptide 3 (75 aa)
LAGILPGDAGEPLDGEGAEGGEHGPAAVDELALAEALEAEDLAVGLERGGFHLGGLEPGAQECARRGGHRRSHGC*

Sequence

>CNT30581381
ACCTTGCCGGCATCCTGCCAGGTGACGCCGGTGAGCCACTCGACGGAGAGGGCGCCGAGGGTGGCGAGCATGGCCCAGCGGCCGTGGATGAGCTCGCACT
CGCGGAAGCGCTGGAGGCCGAAGACCTCGCTGTAGGGCTGGAACGGGGTGGATTTCACCTCGGCGGACTCGAACCGGGTGCCCAGGAATGTGCTCGCCGC
GGCGGCCACCGACGAAGCCATGGCTGCTGATGAGTACTCTACTCCTCGGTGTTCTTTGGGTCCGGTGGTGGTGTGTGT