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Detailed information on CNT30581271


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QVG9|CLPC2_ORYSJ, E-value = 4e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693027Echinochloa crusgalliOryza sativa27.5516.2282.88146forward
CNT30673521Echinochloa crusgalliSetaria viridis40.5759.5689.77215forward
CNT30122306Echinochloa crusgalliPhyscomitrium patens12.8323.6186.7668forward
CNT30300179Echinochloa crusgalliTriticum aestivum35.6616.284.13189forward
CNT30441093Echinochloa crusgalliAegilops tauschii21.722.6486.09115forward
CNT30254596Echinochloa crusgalliAvena sativa27.9211.1683.78148forward
CNT30311914Echinochloa crusgalliCamelina sativa21.3218.2882.3113forward
CNT30685178Echinochloa crusgalliTriticum urartu44.1528.8283.33234forward
CNT30150411Echinochloa crusgalliBrachypodium distachyon27.9229.3182.43148forward
CNT30101573Echinochloa crusgalliOryza rufipogon21.8913.781.9116forward
CNT30498115Echinochloa crusgalliDigitaria exilis25.8517.2887.59137forward
CNT30558331Echinochloa crusgalliPanicum hallii28.111880.54149forward

Expression of CNT30581271

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MPPWPLSTMTFPSESTSTMAESPSLTSPASIFSARLSSSSLMIARLNGRAP*

Sequence

>CNT30581271
AACCAGACTCTACATGTTTTCGTGTTCCAGGTGAAATTAATTTCAAAGACAAAAATACTTGAATTTGAAAATTAAATTCAAAGGCAACATCGATTTCTCC
TTCGACTATACCTCTACATATATACAGTTATACGCTACCTATAATAATGTGTGTGAAATGAAAACTCAACTATTCTGTCATCTGTTATGTACAATAATCT
AAACAGTGACCGCCGGAGTAGGGATCTCCGGTATGCCACCCTGGCCATTGAGCACGATGACCTTCCCCTCTGAATCAACATCCACAATGGCAGAGTCACC
CTCCTTGACCTCCCCGGCAAGCATCTTCTCTGCGAGACTATCCTCCAGCAGCCTCATGATAGCCCGCCTCAATGGCCGCGCTCCATAGCTAGGGTTGTAG
CCTTCATCTACCACCCGCTCCTTGAACTTCTCGGTGACCTCCAGGATGATATCCTGGAGGTGAACCAATCAGTTTGGAGACGGTGTGTCTCTCCATGAAT
TCACTCATGTCAAGCCGGATCATAGCCTCC