« Back to Echinochloa crusgalli search


Detailed information on CNT30581058


BLAST search results

BLAST vs Swiss-Prot:
sp|Q07473|CB4A_ARATH, E-value = 9e-49

BLAST vs NONCODE:
NONBNAT002655, E-value = 5e-11

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30708177Echinochloa crusgalliGlycine max26.7424.8181.99261forward
CNT30179479Echinochloa crusgalliSecale cereale24.2834.2587.76237forward
CNT30387274Echinochloa crusgalliTriticum turgidum24.2852.988.61237forward
CNT3013737Echinochloa crusgalliZea mays11.0723.1897.22108forward
CNT30229721Echinochloa crusgalliAnanas comosus26.8411.1689.31262forward
CNT30147934Echinochloa crusgalliBrachypodium distachyon22.9558.7996.43224forward

Expression of CNT30581058

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MVVWSGSLRCVAQLLSGPLPVAAACTAKPRKATMARRACLISASCSRSFFSGSDASPSGSK*

>peptide 2 (58 aa)
MRPFCGAGSASRVPRNVLAAAATDEAMAADEYSTPRCSLGPVVVCVAGRRRGLIGKFL*

>peptide 3 (38 aa)
MCSPRRPPTKPWLLMSTLLLGVLWVRWWCVWRGDGGAL*

Sequence

>CNT30581058
GGTAACCTTATTGTAACAAAGAAATTAACCATGGTTCATCACCTCAAGACGATGTACAAGTGAATGCATTGATTCATTCAGGTTCATATATTACAAATGA
CCAAGTCGACCCAGCAGTAGCAGCTCTCCTAATTAACACGACCTCCATTAACAAAGGACCGGATCGAATCCATCTTCCCATTCCCTCTCATCACTCATCA
TCACAGAATGATACCATATCTATCTCCAGCTGATGATAGAGATCACGGTTAATTAATTCAAGAACATCACGTTTCGGATCGATCGACGCTGGCGGGCTTA
AGAGGATGCTCCGAAGGTGTCGAAGATGGTGGTGTGGAGCGGGTCGCTGAGGTGCGTGGCCCAGTTGTTGAGCGGGCCCTTGCCGGTGGCGGCGGCCTGC
ACGGCGAAGCCGAGGAAGGCGACCATGGCGAGGCGCGCGTGCTTGATCTCCGCCAGCTGCAGCCGCTCCTTCTTCTCCGGGTCCGACGCCAGCCCCAGCG
GGTCGAAGTAGGACCCGCCCGGGTACAGCCTCTTCTCCGGGTCCAGCTCCGCGTTGCGCTGGAACTCGATGTACTCCGCGGGCTTGCCCAGGCCCCACGG
GTCGAACCCGTAGTCGCCCACCAGCGACCCGTCGAGGTAGTCGGGCGCCACCGCGCCGGGGAACCACAGCGGCCGGTCGGAGCTCGTCGACGACTTGGCC
GCCTTCTTCGGGGCCGCCGGCTTCTTGCCGAACCCGAACCGGGCCACGATGCGCCCGTTCTGCGGCGCCGGGTCCGCCAGCCGGGTGCCCAGGAATGTGC
TCGCCGCGGCGGCCACCGACGAAGCCATGGCTGCTGATGAGTACTCTACTCCTCGGTGTTCTTTGGGTCCGGTGGTGGTGTGTGTGGCGGGGAGACGGAG
GGGCCTTATAGGAAAGTTCTTATAAGAAATTCCGGTGTTATCTCCGCGTGGCAGATCGCACGGCCGTGGAACGGAT