« Back to Echinochloa crusgalli search


Detailed information on CNT30581037


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 3e-103

BLAST vs NONCODE:
NONMEST001181, E-value = 4e-87

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30289038Echinochloa crusgalliTriticum aestivum95.6564.1790.91462forward
CNT30386702Echinochloa crusgalliTriticum turgidum9462.4590.97454forward
CNT30659411Echinochloa crusgalliTriticum dicoccoides96.0761.2190.95464forward
CNT30116053Echinochloa crusgalliOryza nivara96.076690.73464forward

Expression of CNT30581037

Peptides detected in this lncRNA

>peptide 1 (64 aa)
ASVTDGLLTTAETEHKVEGGLFLNVVVSQGAAILQLLACEDQTLLVWGDALLVLNLGLHIVNGV*

>peptide 2 (43 aa)
MSLCWSGGMPSLSWIFALTLSMVSEDSTSRVMVLPVRVFTKICI

>peptide 3 (40 aa)
MVSELSTSRVMVLPVKVFTKICMPPLRRSTRWRVLSFWML*

Sequence

>CNT30581037
AGCTTCGGTAACTGATGGCTTACTGACCACCGCGGAGACGGAGCACAAGGTGGAGGGTGGACTCTTTCTGAATGTTGTAGTCAGCCAGGGTGCGGCCATC
CTCCAGCTGCTTGCCTGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTGTCAATGGTGTCTGAGCTC
TCAACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATGCCTCCCCTGAGACGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGGA
TGTTGTAGTCCGCAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGC
CTTGACATTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTTACGAAGATCTGCATCT