« Back to Echinochloa crusgalli search


Detailed information on CNT30580977


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30116193Echinochloa crusgalliOryza nivara25.5412.4590.21143forward

Expression of CNT30580977

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MMHGKGKLWRMLRGKGRRWHMMRGKGRRWRMRCGKESGQMWWELGKKTRTCC*

>peptide 2 (36 aa)
MLPFSSRSWPSPVLRAASGDPPVETQLPAYGPQHTL*

>peptide 3 (31 aa)
GQGSSWVGWSMASQCRHLRWLLLQQGKHMAL*

>peptide 4 (56 aa)
GRVAHGWGGVWHRNADIYAGYFFSRVNIWLSEGRWAPVAVYMTNRPVIRVRGGSGV*

Sequence

>CNT30580977
GGGCAGGGTAGCTCATGGGTGGGGTGGAGTATGGCATCGCAATGCCGACATTTACGCTGGCTACTTCTTCAGCAGGGTAAACATATGGCTCTCTGAAGGC
CGGTGGGCTCCGGTTGCAGTATACATGACCAACCGGCCTGTCATAAGGGTAAGGGGAGGCAGTGGCGTATGATGCATGGGAAGGGGAAGCTGTGGCGTAT
GTTGCGTGGGAAGGGGAGGCGGTGGCATATGATGCGTGGGAAGGGGAGGCGGTGGCGTATGAGGTGTGGGAAGGAGAGCGGGCAAATGTGGTGGGAGCTG
GGAAAGAAGACACGGACGTGTTGTTAGTTCGACCTGCCTTGGCAAGAGGCATTGGGCCTCCATTGCTTGCACGGATACGCTTGGTTGCAGGTCCACTGCT
GCCGCCACTAGAAGCACTTGATGCTGCCTTTTTCTTCTCGGTCTTGGCCTTCTCCAGTTCTTCGAGCTGCTTCCGGAGATCCTCCAGTGGAAACTCAGCT
TCCAGCTTACGGTCCTCAACACACTTTATAACAGCTCTCAGCGCAGACTGCTCTTTCTTG