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Detailed information on CNT30580899


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 3e-103

BLAST vs NONCODE:
NONMEST001181, E-value = 7e-92

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30189291Echinochloa crusgalliSecale cereale95.8661.6590.5463forward
CNT30253358Echinochloa crusgalliAvena sativa96.2757.1392.26465forward
CNT30722325Echinochloa crusgalliTriticum spelta96.0760.4290.95464forward
CNT30107357Echinochloa crusgalliOryza longistaminata95.6561.8590.91462forward
CNT30592842Echinochloa crusgalliEragrostis curvula95.2456.5893.7460forward

Expression of CNT30580899

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MSLCWSGGMPSLSWIFALTLSMVSEDSTSRVMVLPVRVFTKICI

>peptide 2 (64 aa)
ASVTDGLLTTAETEHKVEGGLFLNVVVSQGAAILQLLACEDQTLLVWGDALLVLNLGLHIVNGV*

>peptide 3 (40 aa)
MVSELSTSRVMVLPVKVFTKICIPPLRRSTRWRVLSFWML*

Sequence

>CNT30580899
AGCTTCGGTAACTGATGGCTTACTGACCACCGCGGAGACGGAGCACAAGGTGGAGGGTGGACTCTTTCTGAATGTTGTAGTCAGCCAGGGTGCGGCCATC
CTCCAGCTGCTTGCCTGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTGTCAATGGTGTCTGAGCTC
TCAACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATCCCACCCCTCAGGCGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGGA
TGTTGTAGTCCGCAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGC
CTTGACATTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTTACGAAGATCTGCATCT