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Detailed information on CNT30580811


BLAST search results

BLAST vs Swiss-Prot:
sp|Q84PD8|SAP11_ORYSJ, E-value = 8e-21

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672179Echinochloa crusgalliSetaria viridis19.2558.3396.94196forward
CNT30523658Echinochloa crusgalliSetaria italica19.3521.6789.85197forward
CNT30533125Echinochloa crusgalliEucalyptus grandis12.2824.0485.6125forward
CNT30444092Echinochloa crusgalliAegilops tauschii17.1921.6392175forward
CNT30449351Echinochloa crusgalliSaccharum spontaneum14.1521.7997.22144forward
CNT30330555Echinochloa crusgalliDioscorea rotundata13.0643.0483.46133forward

Expression of CNT30580811

Peptides detected in this lncRNA

>peptide 1 (64 aa)
GGDVKCIIVLHKVACDRYIHPIHLLIVSSLDLKPQPPRLIRHDHHYYTILCPPLFSPPIPIRKS*

>peptide 2 (48 aa)
MYMDVYVCVSFPLWMRELFVSVVDQNLTILAARTTGLSLAMASLAAPL*

>peptide 3 (97 aa)
MPLALPGERNTAQQQQPCACLCLGARTRRGGAARELAFPEEAGERGREDGRGGGCGSCGRGGRGCDRRGARNGREAPGPFYRGKGREEGDGGRVVLVP

Sequence

>CNT30580811
GGGGGGGATGTCAAATGTATAATAGTTTTGCACAAAGTTGCGTGTGACAGGTACATACACCCAATCCATTTGCTCATCGTTTCTTCCCTCGACCTCAAAC
CTCAACCACCGCGGCTGATAAGGCATGACCACCATTATTACACTATTCTTTGTCCACCTCTTTTTTCCCCTCCCATTCCCATAAGAAAATCATAAAAAAA
GGAGATTAAAATCAAATACTTTGAACTTTTGAAGAACAGCATAATAACACCAAAGGCCTTGTTCCATGTACATGGATGTGTATGTGTGTGTTTCTTTTCC
TTTGTGGATGCGGGAATTGTTTGTCTCCGTCGTCGATCAGAACCTAACGATCTTGGCGGCGCGCACCACCGGGTTGTCCCTGGCGATGGCGTCCCTGGCG
GCGCCCTTGTAGTCGTAGCTGCAGCCGTGCCGGTCCGAGTACCGGTGCGCGCCGCAGAAGAGCTCGCCGCACCGGCAACGGAACCCCGTCAGCCCCACCC
GCTTCCGGCAGCTCGAGCACCGGTTCACCGACGCCCTCGCCGGAGCCGGCACGGCGGGGGGACGCCGGCAGCGGCGACGGCATCGACGCCGTGGCGGCGG
AGAAGCAGCTCTGGCACAGGTTCTGCGTGGCCGGGTTCCCCGGGAAGCCGCAGTTGTTGGCGCAGAGCGTGATCTCCGGCGCCCGGAGCTCCGTGGGCTC
CTCCTTCTTGTCGCGCTGCGCCATGCCGCTCGCTCTCCCTGGCGAAAGGAACACCGCGCAGCAGCAGCAGCCGTGCGCCTGCCTCTGCCTGGGGGCACGT
ACGCGGCGCGGTGGCGCGGCCCGGGAGCTCGCTTTTCCGGAGGAGGCTGGGGAGAGGGGCCGGGAGGACGGACGCGGAGGAGGCTGCGGATCGTGTGGGA
GGGGAGGGCGCGGCTGTGATCGGCGAGGAGCGAGGAATGGACGGGAGGCGCCCGGGCCTTTTTATCGGGGCAAAGGAAGGGAAGAGGGAGACGGGGGACG
CGTCGTCCTCGTCCCCTT