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Detailed information on CNT30580794


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LM15|RA213_ARATH, E-value = 1e-09

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696108Echinochloa crusgalliOryza sativa28.6930.8887.14482forward
CNT30672261Echinochloa crusgalliSetaria viridis22.873.5186.68383forward
CNT30520536Echinochloa crusgalliSetaria italica33.9978.1193.87571forward
CNT30554882Echinochloa crusgalliOryza glaberrima28.6947.1683.4482forward
CNT30440289Echinochloa crusgalliAegilops tauschii6.7322.3892.92113forward
CNT30347505Echinochloa crusgalliEragrostis tef14.8829.189.6250forward
CNT30362823Echinochloa crusgalliSorghum bicolor17.255.6884.78289forward
CNT30103455Echinochloa crusgalliOryza rufipogon2540.0486.19420forward
CNT30496207Echinochloa crusgalliDigitaria exilis55.4841.9190.99932forward
CNT30117581Echinochloa crusgalliOryza nivara21.7323.0184.11365forward

Expression of CNT30580794

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MTRRRTRGRTRTRRRRTARSSCWWGRRRTWWQQLRQTSWRPSWMRRCSGRAAGAWRRRRRGEGRGRRRCRGS*

>peptide 2 (94 aa)
QYSSSSDYNFSTQLLLILHHTTISHHSAVHTTCRAAGAATPYRETKLPEQWTPDRPESLTNDRPTTPETPDTKTPASHRLVLSSGNQTLTEIYN*

>peptide 3 (32 aa)
MALVVDLHETLLAQGRCGKRTPLGDQTSNLDC*

>peptide 4 (36 aa)
MFWQSCWSLASTEAWRGPREAALSGKLRRAASPRRR*

Sequence

>CNT30580794
CAATATAGTAGTTCATCAGATTACAACTTCTCGACACAACTACTCCTGATTTTACATCATACAACAATATCACATCACTCCGCTGTTCATACAACCTGTA
GAGCAGCAGGAGCAGCAACACCCTACCGAGAAACAAAGCTACCAGAACAATGGACACCTGACCGGCCTGAGTCACTGACCAATGACCGACCGACCACACC
GGAGACGCCGGACACAAAAACGCCGGCTTCCCATCGGTTGGTTCTCTCCTCCGGGAACCAAACCCTAACAGAGATCTACAATTGACTGACCATGAACACC
AAAACGAATTCTGAAACATCTACACAAAACGAACGGGATTAGATCTAATAATCCACCAGTGCCCGCGCAGGATGTAAAAAATCCCATCTGCGCGACGGCC
GTTAAGCCTCTGCTGCTTCTGTAGTAGAAGGAGCCAAGAAGAAATGGAAGGCAGTGGTTAATTGGCGGCGAGGAGGGAGTCCCAGTCGATCTCGTACGAC
GGGTACTTGGTGAGCGCGAAGCCGGCGGCCTCGTCCCACGGCGCCTCGCTGAAGTCCAGCTGCTGCATCTCCGGCACCGTCGCCTCGGGAGAGGCGGACA
GCGACGGGGACGGGCAGGATGACTCGGCGGCGGACTCGAGGCAGGACGAGGACGCGTCGTCGGAGGACGGCGAGGAGCAGTTGCTGGTGGGGGCGGAGGA
GGACGTGGTGGCAGCAGCTGCGGCAGACTTCTTGGCGCCCTTCTTGGATGCGGCGATGTTCTGGCAGAGCTGCTGGAGCTTGGCGTCGACGGAGGCGTGG
AGAGGGCCGCGGGAGGCGGCGTTGTCGGGGAAGTTGAGGCGCGCCGCGTCGCCGCGGAGGCGGTAGGCGGCCTGGTCGTAGGCGAGCGCCGCCTCCTCGG
CGGTGTCGAAGGTGCCGAGCCAGAGGCGGGCCTGGATGTACTGGATCTGGGCCGGGCTCAGCTGGCCCGCACAGTCGGCGGCGGCGGCGTACGGGTACGC
GCCGTAGGCGGCAGCGGCGGCGGAGGCGTGGTGGAAGGAGAAGGGCGAGGTGGGGCTGTGAGGGTGCTGTTGTTGGAGAAACGGACTAGATTCGTGAGGA
GCAGAGGCATCCCGGATAAAAGGCTCGAGTGCTCTCATCAGCTCCTCCCCGGACACATCTGTAGTAGTAGCCATCTGACTATAGAAAGATCTGAACAAAA
ACTCTCTTTTTTTGTTTTTTTTCTCTAGCAAACCAAGAACAAATCAGGCAGAACCCAACAGCCACAGTAAAAAACAGATGGCTCTGGTGGTAGATCTGCA
CGAGACCTTACTTGCACAAGGGAGGTGTGGAAAAAGAACCCCTCTTGGCGACCAAACTAGCAACCTAGACTGCTAAAAAAAGACCCAAACAGAAGAAGAA
ACAGCAGATCTGAAGCCCCGGGGTCTAAAACGCCCCGGGTCTTTCGCTGTCTGCTCGAGGAAGGCGAAAACGAAACCAAGAAAATCGAAAGGGCGAGGAG
GAAGGAGGGCTGAGAGAGAAAACTTTACCTGTTTCGCGCGAGGACTCGCTCAGATCTAAGCTTACCTCGCTCGAGCTCACTTTGAACGGTGGTGGGTGGG
CGCTGGCGGTCGGAGGCGGATTGGGCTGTGGGCGAGTGGAGGGAGATGGGATGACTGGTGGTCTGTGGAGTGTTGGTGGG