« Back to Echinochloa crusgalli search


Detailed information on CNT30580758


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30147796Echinochloa crusgalliBrachypodium distachyon32.0941.0695.71163forward

Expression of CNT30580758

Peptides detected in this lncRNA

>peptide 1 (48 aa)
VVVVINLLLTKKLTMVHHLKTMCTSECIDSSLVHILQMTKSQQQQLSY*

>peptide 2 (74 aa)
MIDAWIMGRAGLRGSSEGVEDGAARVQPLLRVQLRVALELDVPDHQHLDPDQRRDREGQRLPQVRRPVHQLHLHA

>peptide 3 (71 aa)
MDNGPGGLKRILRRCRRWSRPGTASSPGPAPRCAGTRCTRSPAPRSRSASRSRRAAAAPGTTTRPPAPPACA

>peptide 4 (54 aa)
MEPPGYSLFSGSSSALRWNSMYPITSTSIQISVEIEKGSGCPRYDDPSTSSTCMR

Sequence

>CNT30580758
GTAGTAGTGGTAATTAACCTTCTTCTAACGAAGAAATTAACCATGGTTCATCACCTCAAGACGATGTGTACAAGTGAATGCATTGATTCATCACTGGTTC
ATATATTACAAATGACCAAGTCCCAGCAGCAGCAGCTCTCCTATTAACGCGCGCGACCTCCATTAACAAAGGACTAGATCGGATCCATCTTCCCATACCC
TCTCACTCAATCATCACAAAATGATTACATCCATCTCCAGCTGATGATAGAGATCACGGTTAATTAATTCAAGAACAGCTGATGATCGACGCATGGATAA
TGGGCCGGGCGGGCTTAAGAGGATCCTCCGAAGGTGTCGAAGATGGAGCCGCCCGGGTACAGCCTCTTCTCCGGGTCCAGCTCCGCGTTGCGCTGGAACT
CGATGTACCCGATCACCAGCACCTCGATCCAGATCAGCGTCGAGATCGAGAAGGGCAGCGGCTGCCCCAGGTACGACGACCCGTCCACCAGCTCCACCTG
CATGCGCC