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Detailed information on CNT30580752


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7M0|CB3_ARATH, E-value = 5e-148

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30454234Echinochloa crusgalliSaccharum spontaneum76.5682.9795.44614forward
CNT30133578Echinochloa crusgalliLolium perenne77.3167.4689.35620forward

Expression of CNT30580752

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MACTKNPNMENMARRPFLISFTLSSAKYWPPG*

>peptide 2 (36 aa)
MQPSAPSMAQRPWITSRALFRANASGSAESPAVSQP*

>peptide 3 (31 aa)
MRKPSTRPMRMTWKPSTARMLCACTRFGLPR*

>peptide 4 (45 aa)
AYYKPKNSSSTFLNPENTIFAFIGGGGTNVMSQTSSLQWWHKEAV*

Sequence

>CNT30580752
GAGCATACTACAAACCCAAAAACTCCTCCAGTACATTCCTGAATCCTGAGAACACGATATTTGCATTCATTGGTGGTGGTGGTACAAATGTGATGTCACA
AACGAGTAGTCTACAATGGTGGCACAAAGAAGCCGTCTAGCTTAAGACCCTGGCGTGAACTTGGTGGCGTAGACCCATGCGTTGTTGGCGACGGGGTCAT
CAAGGTGGTCGAGCAGGTTCTCGAGTGGGCCCTTGCCGGTGACAATGGCCTGCACGAAGAACCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAT
CTCCTTCACCTTGAGCTCGGCGAAGTACTGGCCGCCGGGGTAGAGGTTGTTGCCCTCGCCGACGCCGTCGAGCCCGTTGATGCGGAAGCCCTCGACAAGG
CCCATGAGGATGACCTGGAAGCCCAGCACGGCGAGGATGCTCTGCGCGTGCACCAGGTTTGGGTTGCCCAGGTAGTCGAGCCCGCCCTCGGAGAAGATCT
GCGCGCCGGCCTTGAACCACACGGGCTCCTTGAAGTCCACGCGCACCCACTTCTCCAGCACCTCCGGGGTGATGCAGCCCAGCGCGCCCAGCATGGCCCA
ACGCCCGTGGATCACCTCCAGGGCCCTGTTCCGGGCGAACGCCTCCGGGTCCGCGGAGAGCCCGGCCGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCG
GTGAGGTACGAGGGCGTCTGCGCCGAGAAGGGGCCCAGGTACTTGACGCGGTCCGGGCCGTACCACAGGTCGTTGCTCTGCAAATGAAACGCCGCGACTT
GT