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Detailed information on CNT30580641


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552138Echinochloa crusgalliOryza glaberrima27.5510.8682.68127reverse complement
CNT3013988Echinochloa crusgalliZea mays30.815.9789.44142reverse complement
CNT30595515Echinochloa crusgalliOryza meridionalis27.5513.2884.25127reverse complement
CNT30110721Echinochloa crusgalliOryza longistaminata27.5513.9783.46127forward
CNT3099916Echinochloa crusgalliOryza rufipogon27.5511.3183.46127reverse complement

Expression of CNT30580641

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRMKEKWDSAEGFLLGLWNFFMATTVDTGRSF

>peptide 2 (57 aa)
MQRLRRGGVHNISSSKARTIVTSSPSRLNAGSSSSWLQHSLPMLAVRGGGGDEFLEE*

>peptide 3 (33 aa)
MVSSHLSSKGSRLCSACVGEVCTTSAAARRGRL*

Sequence

>CNT30580641
CTAGGCTGCAGACATTGTCTGGAAACTTTTCTGAACAGATGATGGAATTCGCACCTTAAGTCCCCTTTTCTGATTTGACCAACAATTGGATAAAAAGAAA
AATCTCGCAGAAGCACATCTCAGAAGACGATCCTCCCTCCCTGCCTTGAGGCTTGATGGTGTCGTCCCATCTTAGCAGCAAGGGTAGTAGGCTATGCAGC
GCCTGCGTCGGGGAGGTGTGCACAACATCAGCAGCAGCAAGGCGAGGACGATTGTAACAAGCAGCCCCAGCAGGTTGAATGCTGGCTCATCATCCTCCTG
GCTGCAGCACAGCTTGCCCATGTTAGCTGTTAGAGGGGGAGGAGGAGATGAGTTCTTGGAAGAATGAGGATGAAGGAGAAGTGGGACTCGGCTGAAGGCT
TCTTGCTTGGCTTGTGGAATTTCTTTATGGCAACGACTGTGGATACAGGTCGATCTTTCTA