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Detailed information on CNT30580511


BLAST search results

BLAST vs Swiss-Prot:
sp|P10708|CB12_SOLLC, E-value = 1e-08

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30442646Echinochloa crusgalliAegilops tauschii50.6616.392.19192forward
CNT30244624Echinochloa crusgalliAvena sativa45.1270.0885.38171forward
CNT30669298Echinochloa crusgalliTriticum dicoccoides50.6621.6290.62192forward
CNT309612Echinochloa crusgalliZea mays50.420.394.76191forward
CNT30364335Echinochloa crusgalliSorghum bicolor50.1321.7995.26190forward

Expression of CNT30580511

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MVTRPEVVALAQNGSRPDRDDGASRLGTPTALQLRSPLDDAIAIASSSRWR*

>peptide 2 (36 aa)
HGEHGPAAVVDLGLLEPLEVLRHGGQAQGVEAEVPG*

Sequence

>CNT30580511
CACGGCGAGCATGGCCCAGCGGCAGTGGTAGACCTCGGACTCCTTGAACCGCTCGAAGTTCTCCGGCACGGTGGCCAGGCCCAGGGGGTCGAAGCCGAAG
TCCCTGGATAACAAAACAGTGGCAGGAGCCGTCGAGGTGGGCAGGGCGGGGCTGGCCGGGCATCCACTCGGCGGACATGGTGACGCGGCCGGAGGTGGTG
GCGTTGGCGCAGAACGGCAGCCGGCCGGACCGGGACGACGGCGCCAGCAGGCTGGGCACGCCCACGGCGCTGCAGCTCCGGAGCCCGCTCGACGACGCCA
TCGCCATTGCTTCCTCCTCCCGGTGGCGCTGATCCGATCCTGAGACAAGACGAGCTACAACAAGACGAGCTACAGCAAG