« Back to Echinochloa crusgalli search


Detailed information on CNT30580422


BLAST search results

BLAST vs Swiss-Prot:
sp|O22914|CP121_ARATH, E-value = 6e-32

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523223Echinochloa crusgalliSetaria italica34.5846.5987.93232forward
CNT30290105Echinochloa crusgalliTriticum aestivum33.2349.1285.65223forward
CNT30387749Echinochloa crusgalliTriticum turgidum33.2335.0186.1223forward
CNT30592246Echinochloa crusgalliMusa acuminata23.126.4587.74155forward
CNT30134237Echinochloa crusgalliLolium perenne33.2335.4585.65223forward
CNT3015512Echinochloa crusgalliZea mays35.3227.5686.08237forward
CNT30497736Echinochloa crusgalliDigitaria exilis34.5833.4387.07232forward
CNT30557621Echinochloa crusgalliPanicum hallii40.5449.5490.81272forward

Expression of CNT30580422

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MVRARLLCLLDALRHLVGDLRRRRRDREARHRRRHLGV*

>peptide 2 (42 aa)
MHSPSSVWSAHVSSAFLMLSDTLSEISGGVAGIERLATVDAI*

>peptide 3 (35 aa)
MAKSLYIPKVITIVVMAHNLVKYKNKSLYIPKHLN*

>peptide 4 (36 aa)
MFDYLYRPARSSCRRCGTRRRRGCPCSSSRAGRCSP*

Sequence

>CNT30580422
ATTAAAAATTTTCTAGTTTTATAATTCGATGATCAAAACCAAACCGAGCCGATAGTTGAACGGTCAAAAATAGACTTCTTTCTAATTATAATATACAATG
GCGAAAAGTTTATATATACCGAAAGTAATTACCATAGTCGTAATGGCACACAACCTCGTGAAGTATAAGAACAAAAGTTTATATATACCGAAACATTTGA
ACTGACACAAAACCGGATGCATCGATTCCACGAGGTCTATTCAAGCGTCTATATACAAATTTAGCATGTTTGATTACTTATACAGGCCCGCGCGCTCTAG
TTGTCGTAGGTGCGGCACTCGTCGGCGTCGGGGTTGTCCTTGCAGTAGTTCTCGAGCGGGTCGCTGTTCTCCTTGAGCTTGTCCCGGGCGTGGCTCGCCG
CGGCGCTGAGCTCCTCCACCTCGTCCCACGCCACAATGCACTCCCCGTCTTCCGTATGGTCCGCGCACGTCTCCTCTGCCTTCTTGATGCTCTCCGACAC
CTTGTCGGAGATCTCCGGCGGCGTCGCCGGGATAGAGAGGCTCGCCACCGTCGACGCCATTTAGGAGTGTAGATTATTTGGTGTAGTGGCTTTTTACTTG
CTGTCGTGAAGAAGAATTGTGCGAGGCGGTGCGCTGGAGAATGATCGAGATGAGGTTTATATATAGATATA