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Detailed information on CNT30580392


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30586289Echinochloa crusgalliMusa acuminata18.6336.2792.23103forward
CNT30246208Echinochloa crusgalliAvena sativa22.9722.491.34127forward
CNT30620908Echinochloa crusgalliCajanus cajan24.5919.1585.29136forward

Expression of CNT30580392

Peptides detected in this lncRNA

>peptide 1 (37 aa)
VERSKIDFFLIIIYNGEKFIYTESNYHSRNGTQPREV*

>peptide 2 (36 aa)
MFDYLYRPARSSCRRCGTRRRRGCPCSSSRAGRCSP*

>peptide 3 (35 aa)
MAKSLYIPKVITIVVMAHNLVKYKNKSLYIPKHLN*

Sequence

>CNT30580392
GTTGAACGGTCAAAAATAGACTTCTTTCTAATTATAATATACAATGGCGAAAAGTTTATATATACCGAAAGTAATTACCATAGTCGTAATGGCACACAAC
CTCGTGAAGTATAAGAACAAAAGTTTATATATACCGAAACATTTGAACTGACACAAAACCGGATGCATCGATTCCACGAGGTCTATTCAAGCGTCTATAT
ACAAATTTAGCATGTTTGATTACTTATACAGGCCCGCGCGCTCTAGTTGTCGTAGGTGCGGCACTCGTCGGCGTCGGGGTTGTCCTTGCAGTAGTTCTCG
AGCGGGTCGCTGTTCTCCTTGAGCTTGTCCCGGGCGTGGCTCGCCGCGGCGCTGAGCTCCTCCACCTCGTCCCACGCCACAATGCACTCCCCGTCTTCCG
TATGGTCGCCGGGATAGAGAGGCTCGCCACCGTCGACGCCATTTAGGAGTGTAGATTATTTGGTGTAGTGGCTTTTTACTTGCTGTCGTGAAGAAGAATT
GTGCGAGGCGGTGCGCTGGAGAATGATCGAGATGAGGTTTATATATAGATATA