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Detailed information on CNT30580322


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30729972Echinochloa crusgalliCorchorus capsularis25.3823.2683.58134forward
CNT30659185Echinochloa crusgalliTriticum dicoccoides27.6527.3991.78146forward
CNT30216686Echinochloa crusgalliKalanchoe fedtschenkoi28.2225.9687.25149forward

Expression of CNT30580322

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MFDYLYRRARALVVVGAALVGVGVILAVVLERVAVLLELVPGVARRGAELLHLVPRHHALPVFRRRSREDRHRRRHLGV*

>peptide 2 (53 aa)
MARNLAKYENESLCIPKTFELTQNRMHRFHEVYFKRLYTNLACLITYTGARAL*

>peptide 3 (45 aa)
VYYVFLIHARTLLIIIYTLKFMYGEKFIYTESNYHSRNGTQPREV*

>peptide 4 (31 aa)
LLCLSNTRAYSTNYNIYTKIYVRRKVYIYRK*

Sequence

>CNT30580322
GTTTACTATGTCTTTCTAATACACGCGCGTACTCTACTAATTATAATATATACACTAAAATTTATGTACGGCGAAAAGTTTATATATACCGAAAGTAATT
ACCATAGTCGTAATGGCACGCAACCTCGCGAAGTATGAGAACGAAAGTTTATGTATACCGAAAACATTTGAACTGACACAAAACCGGATGCATCGATTCC
ACGAGGTCTACTTCAAGCGTCTATATACAAATTTAGCATGTTTGATTACTTATACAGGCGCGCGCGCGCTCTAGTTGTCGTAGGTGCGGCACTCGTCGGC
GTCGGGGTTATCCTTGCAGTAGTTCTCGAGCGGGTCGCTGTTCTCCTTGAGCTTGTCCCGGGCGTGGCTCGCCGCGGCGCTGAGCTCCTCCACCTCGTCC
CACGCCACCACGCACTCCCCGTCTTCCGTCGCCGGAGTAGAGAGGATCGCCACCGTCGACGCCATTTAGGAGTGTAGATTTGGTGTAGTGGCTTTACTTG
CTGTCGTGAAGAAGAATTGTACGAGGCG