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Detailed information on CNT30580303


BLAST search results

BLAST vs Swiss-Prot:
sp|P93604|LRK10_WHEAT, E-value = 1e-89

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690198Echinochloa crusgalliOryza sativa77.7816.7987.36364forward
CNT30316242Echinochloa crusgalliCorylus avellana31.213.8981.51146forward
CNT30222581Echinochloa crusgalliHordeum vulgare39.7477.589.78186forward
CNT30552096Echinochloa crusgalliOryza glaberrima22.6518.2189.62106forward
CNT30680010Echinochloa crusgalliTriticum urartu16.8821.3592.4179forward
CNT30319637Echinochloa crusgalliAsparagus officinalis52.9932.5579.03248forward
CNT30149310Echinochloa crusgalliBrachypodium distachyon51.0766.7685.77239forward
CNT30115738Echinochloa crusgalliOryza nivara57.2638.6285.07268forward

Expression of CNT30580303

Peptides detected in this lncRNA

>peptide 1 (31 aa)
HLLHLFFLLICDFSIKNQVLPTDYFLIDPLW*

Sequence

>CNT30580303
GCCATCTGCTTCACCTTTTCTTTCTCCTCATCTGTGATTTCTCTATTAAGAACCAGGTCTTGCCCACTGATTACTTTCTCATAGATCCACTGTGGTAGGT
AGACCTCGTTTTGGTTCTCAATACCTGGGTCTGAGTTCCTCCTTCCACTCACCATCTCTAATACCAGCATGCCAAAACTGTAAACATCTGACTTGTATGA
TATGCCACCAAAATTTGGAGAATATAGCTCCGGTGCAATATAACCCATTGTGCCTCTTGCTGCAGTCAAGGTAACAATGCTTTGGTCCCTTGCACACAGC
TTAGCAAGGCCAAAGTCTGAAATTTTTGGATTAAAGCTGTGGTCAAGCAAGATGTTGTGAGGCTTGATGTCAAAGTGGAGGATGCGCTGGTTGCATCCTT
GATGTAGGTACTCCATTCCTCTAGCAATGCCTATAGCGATATCTACCATTTTTTCAGGTACTAGGAGG