Detailed information on CNT30580297


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9M2T2|PP16A_ARATH, E-value = 9e-09

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30293057Echinochloa crusgalliTriticum aestivum15.4124.9787.62210forward
CNT30437732Echinochloa crusgalliAegilops tauschii14.9729.6989.22204forward
CNT30249607Echinochloa crusgalliAvena sativa29.8630.3387.71407forward
CNT30455685Echinochloa crusgalliSaccharum spontaneum29.9328.0294.12408forward
CNT30135479Echinochloa crusgalliLolium perenne29.228.5789.95398forward
CNT3014485Echinochloa crusgalliZea mays7.2647.692.9399forward
CNT30339116Echinochloa crusgalliEragrostis tef14.0926.9388.54192forward
CNT3099938Echinochloa crusgalliOryza rufipogon20.7626.790.81283forward

Expression of CNT30580297

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MAGSRMGAGKRLPPPRPCRRPDRRCEAGRRRPWLPAGMRRGAGTNRPCLPAGRPMEAGTRRPAEAGCTRIGRRRERTRRPIG*

>peptide 2 (37 aa)
RTKQNSRNSVQIIAETKLQFIYCYSYCIIFTLPYHIR*

>peptide 3 (58 aa)
MSPIRSPPTAPPSSPAPSPIPKLFFFFCGFTACCWYPYPACCGGYPYPPYPACGGGGG*

>peptide 4 (63 aa)
MWTSPTSRSPRARSARRRTWREPAPVAGTLNRSVAFQVGLRPPVRSAWIRCRERGSPESETTA*

Sequence

>CNT30580297
CCGGACTAAACAAAACTCTCGAAATTCGGTGCAAATCATAGCAGAAACAAAACTGCAATTCATATACTGTTACAGTTACTGCATCATATTTACATTACCA
TATCATATCAGATAAGATGCGTGATTTGATTTGGTCCTGACAATTAGGTAGTATTTTCCAGTAGAAACGAAACATATCACAGAGGCAAACCCAAAACAAA
AATAACTCTGCTGCAGTATCCATCACCGGAGCGTTCTAGAAGTCAAATCCACCGTCGAAGCCACCGCCGTCGTCGAACCCGGCGTCGTATCCGGCATCGT
ACGCCGACGAGTCCGAGATCATGTCCCCGATCAGGAGCCCGCCGACGGCGCCTCCGAGCAGCCCGGCCCCGAGCCCCATCCCGAAGTTGTTCTTCTTCTT
CTGCGGCTTCACGGCCTGCTGCTGGTACCCATACCCGGCCTGCTGCGGCGGATACCCGTATCCGCCGTACCCGGCTTGCGGCGGCGGGGGCGGGTAGCCG
TAGCCGGCGGGCTGCTGCTGTGGGTAGCCGTAGCCGTACTGCGGCGGAGGAGCGCCGTAGGGCGCCGCGGTGCTGGGGCCGGCGGCAGGGTAGGCCGTCA
CCGGCTCACCGGCCTTTGCCGGCTTGCCCGACGATGGCGGGTAGCCGGATGGGGGCGGGTAAGCGGTTGCCGCCGCCTCGGCCTTGCCGGCGGCCGGATA
GGCGCTGTGAGGCGGGTAGGCGTCGGCCTTGGCTGCCGGCGGGTATGCGGAGGGGGGCGGGTACGAATCGGCCTTGCCTGCCGGCGGGTAGGCCGATGGA
GGCGGGTACGCGGCGGCCGGCGGAGGCTGGTTGTACGCGGATTGGGCGGAGGAGGGAGCGTACCCGGCGGCCGATTGGGTGACCTCGCCGAGCTTGTAGG
AGAAGTTGAGGGCTCCCTGCGCCTTGCCGGAGGAGATCTTGCGGACCTGGTAGGCGACGAACTTGGCGGGGACGGGGCCGTCGGGGGCGCCGGAGAGGAG
CTCGGAGAGCGGGATGTGGACCTCGCCGACGTCGCGGTCACCGAGGGCGCGCTCGGCGCGGAGGAGGACGTGGAGGGAGCCCGCGCCGGTGGCCGGGACG
TTGAATCGGAGCGTGGCGTTCCAGGTGGGGTTGCGGCCGCCGGTGCGGTCGGCCTGGATCCGCTGCCGCGAGCGCGGGTCGCCGGAGAGCGAGACGACGG
CGTAGACCTCCATCTTGGAGAGCAGGTTCACGTCCTTGAGATCCTTGGCCGAGATCAGCGTCAGCTCCAGCGTCCTCGTCGCCATGGCTGCTGAGAGAAC
CCGCAGACTTTCCGGTGGAGACGAGAGAGAATCAAGATGGATTGGTTGGTTCTTACGAAATCG