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Detailed information on CNT30580242


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6AVI0|RSLE2_ORYSJ, E-value = 0.0

BLAST vs NONCODE:
NONORUT003941, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30249176Echinochloa crusgalliAvena sativa24.4410084.81632forward
CNT30452219Echinochloa crusgalliSaccharum spontaneum86.5868.6490.892239forward
CNT30346251Echinochloa crusgalliEragrostis tef22.8297.3689.49590forward
CNT30362965Echinochloa crusgalliSorghum bicolor81.4473.8491.222106forward
CNT30596250Echinochloa crusgalliOryza meridionalis42.6554.683.591103forward
CNT30107897Echinochloa crusgalliOryza longistaminata75.183.4285.171942forward
CNT30100657Echinochloa crusgalliOryza rufipogon73.470.5884.981898forward
CNT30576541Echinochloa crusgalliOryza barthii73.760.6685.521906forward
CNT30497727Echinochloa crusgalliDigitaria exilis16.0599.7692.77415forward
CNT30557998Echinochloa crusgalliPanicum hallii51.8954.2492.41342forward

Expression of CNT30580242

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MCLLRWLVPAIFAPELYAKVCLQRLQHARVAPPATSSIVKCSHTKDFFLLRLIPVRGVVASATTNSFPCTKSSPWVNSSP*

>peptide 2 (72 aa)
MTTAMASTRLQSFQYLSNLSCISLAMLLKTGSSCPVPFVSSSLSFQASWKKRFEVGFAAAMMLCAESYNSLR*

>peptide 3 (56 aa)
YTYTRTLTSQSTVQNKLNTKPGCSTDSQLINHAACIHPHRVQSQTTPEHNTTKTIT*

>peptide 4 (59 aa)
MASPSNLCTRAVCKGLLAEIAACPGGPSSNFFNSEMLPYQGLLSPPSDSGPRGCCLSNN*

>peptide 5 (39 aa)
MHSIIDHLNILLSLSTIDFGVTKLNKLHLETWIHDNSNG*

>peptide 6 (50 aa)
MSNCGLDQMQHLHNQYICNVSWFVAPHFPHHHCQYLPLKAVPASALDSLS*

>peptide 7 (32 aa)
MGIAPHHKQLSLKHEIVLVGEMIPQVCTVDVM*

>peptide 8 (36 aa)
MSCEEHSLSNVMVNSLSFIFQSERLMLIASLSAFSE*

>peptide 9 (91 aa)
MRLPVPAENMELPLLTMDIGMAKISRAIFERVGNLTVLSFHQFRISNSCIRGVRDSSRYCSSSDFEGWLLWISERYMSKSRSPSPVEAGAP*

Sequence

>CNT30580242
TACACCTACACACGAACATTAACATCACAATCCACGGTACAAAACAAACTGAATACAAAACCAGGGTGTAGTACAGACAGCCAGCTGATAAATCACGCAG
CTTGTATACACCCACATCGAGTTCAAAGCCAGACAACACCAGAACATAATACAACAAAAACCATTACATGACAGCAGCTTGTTAAACAGAGTTTGACACA
AAGAAATTACACCTTTAAGATAAATACCAGAATAGATGACAATCACTTCGCAATCTAAACCTACAATACCCCTACAGTTACTACACATAGATACGGTAGG
TAGATAGTTTCAGCTTCCAGAAGGAAGCAGTGGCCACAGTGAACCTATGATCCTTCAGCCTTGACCAGTGCAGAACTTGGCGCCTCAGTGGCAACTGGTG
AGTACTGGAGCCAGTCTTTTGCACAGACAAGTGCCTCCACAATCTCAGGCCGGAGAGAGCTTCTGTAGTCATCAAGCATGCGACTTCCAGTTCCAGCAGA
GAATATGGAGCTGCCACTGCTTACCATGGACATTGGAATGGCCAAAATATCACGGGCCATTTTTGAGAGAGTGGGAAACTTGACTGTGTTAAGCTTCCAC
CAGTTCAGAATATCAAATTCCTGCATCCGTGGAGTGAGAGATTCATCTAGGTACTGTTCCAGTTCTGATTTTGAGGGCTGGCTACTCTGGATCTCAGAAA
GGTACATGTCAAAGTCTAGAAGCCCATCACCAGTGGAAGCAGGAGCTCCTTGACTGTTATTCGCATTGGCTGGCCCATTGTTCCCTTCACCTTGCTCAAC
ATAGGCTGGGGTCAGTGGGAGTGGCTGGGCCACATAGTCCTTATACAGCTCATGCACAGCATCATTGACCACCTTAACATACTTCTCAGCCTCAGCACCA
TAGATTTTGGAGTAACTAAACTCAACAAGCTTCATCTTGAAACGTGGATCCATGACAACAGCAATGGCTAGCACAAGGCTGCAATCTTTCCAGTACTTGT
CAAACCTCTCATGCATATCCTTGGCGATGCTACTGAAAACAGGATCTTCATGTCCTGTGCCGTTTGTCAGTTCTAGCTTAAGTTTCCAGGCTTCATGGAA
GAAAAGGTTTGAGGTTGGGTTTGCTGCTGCCATGATGCTATGTGCAGAGTCATATAATAGTTTAAGGTAAGTACAGGCAGCCTCAACTTTCTTCCAATCC
TCTGCTGAAGGAGCTTCATTGTAGTTATCATCACATGTCTCTAGTGTACTGAAAGCTTGCTTATAATCCAAGGCAGCCAGCAACATCAGGTAAGTGGTGT
TCCACTGGGTTGTGACATCCAGACAGAGGGTCTTCGTACTGGGAATCTCCAGCTGCAGAGCAATCTCAGCGAACTTTTCTTCACGGGCAGAAGAAGCTTT
TATGAATTTTATGCTTTCACGGATATTGTAGACCACACCGTGAATTGAAGCAATGACATCTTGTGCAACAGCATTAAGGATATGGGCATAGCACCTCACC
ACAAACAGCTGTCCCTTAAGCATGAGATTGTTCTTGTTGGAGAGATGATCCCGCAGGTTTGCACTGTAGATGTCATGTGAGGAGCATTCATTATCCAATG
TGATGGTGAACAGCTTGTCCTTCATATTCCAGTCAGAAAGGCTCATGCTAATTGCTTCACTAAGTGCATTCTCTGAATGAGGGGAAGACACCATCATGAA
GCTAAGCATTCTTCGGTGCACTTTCCATTCGGAGTCAATAAACTGCCCTGCAAGTGAAACATAGCCAAGAGTCTGACTCGTTGACCACAATCCTATAGTG
AGGCTGATCCTTCCGGGCAGAGTGTTGAATGCTTGCAGCAAGTTCTCTCTTTCTTTCTGATAAACAGCATACACCTCTACCTCCATCGTTTCAACATCCA
CAATCTTGAAACGTGGCTGCAGACTCTCAATAAAAGTGGCAAATGCTGCCTGTTGAACAATGTGAAGCGGGTAGTCATGCTGAATGATCATCTTTGCCAG
GTATGAGCAACTGCGGTCTTGATCAAATGCAGCATTTGCATAACCAGTATATCTGTAACGTCTCTTGGTTCGTCGCTCCACACTTCCCTCACCATCATTG
TCAGTACCTCCCGCTGAAGGCAGTGCCAGCCTCTGCTCTTGATTCTTTATCTTAGGACAAGAACCCAAGGTGATGTGCCTCTTGAGATGGCTAGTCCCAG
CAATCTTTGCACCAGAGCTGTATGCAAAGGTTTGCTTGCAGAGATTGCAGCATGCCCGGGTGGCCCCTCCAGCAACTTCTTCAATAGTGAAATGCTCCCA
TACCAAGGACTTCTTTCTCCTCCGTCTGATTCCGGTCCGAGGGGTTGTTGCCTCAGCAACAACTAACTCATTTCCTTGCACCAAATCATCACCTTGGGTC
AACTCATCACCTTGAGCCAATTCTTCGCCTTGGATCAACTCATCGTCTTGAGCCAATTCTTCACCTTGAACCAGCTCATCACCTTGGACTGGCTCATCAA
TGTGGGCAACCTCATTATCTTGGGCCACCTGAGTGTCATTGGCAGTTTCCTCAGCCATGCTGATAGGGTAGCAGCTGAACTTGTTA