Detailed information on CNT30580219


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520842Echinochloa crusgalliSetaria italica18.9635.6885.47172forward
CNT30102577Echinochloa crusgalliOryza rufipogon16.8755.2388.24153forward

Expression of CNT30580219

Peptides detected in this lncRNA

>peptide 1 (89 aa)
PSLFSSPTALLSGAAGAARRLAGVCRWESPLVTAIAHALLMALAHARISSPPAAFLVPRWQRRAHTVPSREPEGARLVVDSRRRGHHVH*

>peptide 2 (80 aa)
SLSLLFSHCAALGRRRRGAAARRRVPLGEPAGDGDRARPAHGPRARPDLIPAGGVPCSPLATPRPHRSFAGTGRSSAGRR*

>peptide 3 (49 aa)
MFMSVQLLVCVHCLIGMAMQLEKNVLAVQSFHCCYDRNVGLLYILFAVE*

>peptide 4 (44 aa)
MGNTASVKIEASDSVEQPATYSSTCNAREPKGSMSDSTGMIFFL*

>peptide 5 (37 aa)
MCNVYVSSAPRLCALFDWHGNAARKECACCAEFPLLL*

>peptide 6 (37 aa)
MCLLCRVSIAVMTEMWDYYIFYLPWSDKNISEFYEYI*

>peptide 7 (32 aa)
LPLSSLLPLRCSRAPPARRGGSPACAAGRARW*

Sequence

>CNT30580219
CTCCCTCTCTCTTCTCTTCTCCCACTGCGCTGCTCTCGGGCGCCGCCGGCGCGGCGCGGCGGCTCGCCGGCGTGTGCCGCTGGGAGAGCCCGCTGGTGAC
GGCGATCGCGCACGCCCTGCTCATGGCCCTCGCGCACGCCCGGATCTCATCCCCGCCGGCGGCGTTCCTTGTTCCCCGCTGGCAACGCCGCGCCCACACC
GTTCCTTCGCGGGAACCGGAAGGAGCTCGGCTGGTCGTCGATAGCCGCCGCCGTGGCCACCATGTGCATTAGCTCCGCCTCGTCCGCCGGCGCCATGACC
ACCATGTTCGGCAGGCACGCCATGTAGGCCACGTCGAAGGCGCCGCAGTGCGTGGGGCCGTCGGCGCCGACGAGCCCCGTCCTGTCGATGGTGAACCGCA
CCGGCAGCCGCTGCAGATATGGGGAACACTGCATCTGTGAAAATTGAGGCTTCGGATTCAGTGGAGCAACCTGCCACCTACAGCTCCACCTGCAATGCCC
GAGAGCCGAAGGGTTCAATGTCTGACAGCACTGGAATGATTTTCTTCCTGTAGCACTGGAATCTGTCGTCTGCAAGTTCACATTTGCTCATGATCTGTTG
TCCTGTTGTCTATCCTGTGGTTGCTTCTTGCATCTCGAATCATCAATCACCTGCACTGGAATGATTTTCTTCTTGTAGCACTGTAAACTTGCTCATGTGT
AATGTTTATGTCAGTTCAGCTCCTCGTCTGTGTGCATTGTTTGATTGGCATGGCAATGCAGCTAGAAAAGAATGTGCTTGCTGTGCAGAGTTTCCATTGC
TGTTATGACAGAAATGTGGGATTACTATATATTTTATTTGCCGTGGAGTGATAAGAACATATCTGAATTTTATGAATATATCTGAATGATTTGTTGTCCT
GTTGTCT