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Detailed information on CNT30580197


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30530404Echinochloa crusgalliEucalyptus grandis41.9997.4684.1346forward
CNT30316147Echinochloa crusgalliCorylus avellana43.9348.5982.87362forward
CNT3021362Echinochloa crusgalliCitrullus lanatus21.3627.0482.95176forward
CNT3068683Echinochloa crusgalliQuercus suber48.7981.7180.85402forward
CNT3091042Echinochloa crusgalliSolanum tuberosum9.4721.3785.978forward
CNT30289293Echinochloa crusgalliTriticum aestivum15.5342.1188.28128forward
CNT30539234Echinochloa crusgalliBrassica napus49.0344.1581.19404forward
CNT30261302Echinochloa crusgalliBrassica rapa48.1876.7981.11397forward
CNT30457070Echinochloa crusgalliSaccharum spontaneum64.5678.1293.61532forward
CNT30131528Echinochloa crusgalliLolium perenne38.4768.7687.7317forward
CNT30231964Echinochloa crusgalliAnanas comosus22.6915.3381.82187forward
CNT30718631Echinochloa crusgalliMalus domestica golden46.1266.280.53380forward
CNT30339698Echinochloa crusgalliEragrostis tef47.6931.8288.55393forward
CNT30363710Echinochloa crusgalliSorghum bicolor27.6738.8496.05228forward
CNT30360575Echinochloa crusgalliLactuca sativa32.6544.6181.41269forward
CNT30425316Echinochloa crusgalliPapaver somniferum19.5433.481.37161forward
CNT3055709Echinochloa crusgalliAmborella trichopoda19.0524.0184.08157forward
CNT30105598Echinochloa crusgalliOryza longistaminata55.4666.3391.03457forward
CNT30102778Echinochloa crusgalliOryza rufipogon10.1933.290.4884forward
CNT30574680Echinochloa crusgalliOryza barthii45.5140.9490.93375forward
CNT30115589Echinochloa crusgalliOryza nivara45.5126.2890.93375forward
CNT30603506Echinochloa crusgalliOryza punctata47.2177.4992.29389forward
CNT30550386Echinochloa crusgalliOryza brachyantha33.3710092275forward
CNT30337932Echinochloa crusgalliCynara cardunculus30.5830.7381.75252forward

Expression of CNT30580197

Peptides detected in this lncRNA

>peptide 1 (88 aa)
MRDVPLAAREEVVHHDHAVAALDQPVHEVAPDEPGAARHEHPQRAPAQPQGHLAADGLAERRVTADGEVVESCRRAGVGRGRGGGGGG*

Sequence

>CNT30580197
ACCAATAGGATTGACATTGCCCCAATAAGTTTCCACCTGAGGGTGCTGGAGGGGATCACCATAGACCTCACTGGTGCTGGTGAGTAGAAACCTTGCCCCG
ATCCTCTTGGCCAATCCAAGCATATTCAGTGTCCCAACTACATTTGATATGATGGTCTTGATGGGGTTGTACTTGTAGTGCACGGGGCTGGCCGGGCAGG
CAAGGTGGTAGATCTGGTCGACCTCGAGCAGTATGGGCTCGACGACGTCGTGGCGGATCACCTCGAACCTGGGGTTCTGGAGGTGATGCGCGACGTTCCC
CTTGCGGCCCGTGAAGAAGTTGTCCACCACGATCACGCTGTCGCCGCGCTCGATCAGCCGGTCCACGAGGTGGCTCCCGACGAACCCGGCGCCGCCCGTC
ACGAGCACCCGCAGCGCGCGCCGGCGCAGCCCCAGGGGCACCTTGCCGCCGACGGACTCGCGGAACGACGGGTGACCGCCGACGGCGAGGTGGTTGAATC
CTGCCGACGCGCCGGGGTAGGACGGGGACGAGGTGGTGGAGGTGGCGGATGAGGAGAAGGTGAAGAGGGCGGCGGCGAAGAGCATGCCGGCGAGGGCGAA
GACCGGGCGGTGCTCGGCGGCGGCGTAGCGGGCGGCGCGGGAGAGCCAGGAGAGCGGCTTGGAGGGCTTCGGGGAGTACTCCCCGCCGTTGGAGGCGGAG
CCGGGCGCCGCGGCGCCGCCCCGGTATGTCAGCTCCGACGCCATCTCCGGCGAAGGGGCCGGATGTAAATTTCAGTTGGGGATTTTGGACCAGTCTGTGA
AGGGGGAGGAGGAGTCAGTAGCGA