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Detailed information on CNT30580151


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SDM1|CB121_HORVU, E-value = 9e-55

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673891Echinochloa crusgalliSetaria viridis7481.5986.15390forward
CNT30515355Echinochloa crusgalliJuglans regia33.9729.1182.12179forward
CNT30525458Echinochloa crusgalliPhaseolus vulgaris32.839.5480.35173forward
CNT3034379Echinochloa crusgalliTheobroma cacao32.8322.1879.77173forward
CNT3058384Echinochloa crusgalliAmborella trichopoda33.436.984.66176forward
CNT30102128Echinochloa crusgalliOryza rufipogon55.7950.7892.18294forward
CNT30576871Echinochloa crusgalliOryza barthii55.7934.1992.18294forward

Expression of CNT30580151

Peptides detected in this lncRNA

>peptide 1 (96 aa)
MVLGMMMSPMLLCHGSARWPSGSKAPPGYFFFSGSFSMVRWCSAKAMATNSITRMVGSEPHGTGLPRYVACPPGTAAHSCAFTQLPRPSASGTKIPG

>peptide 2 (82 aa)
TGIYLVLIISFTLQGVSGRKVTGVRCTVPARSQAVPSHQPITHKTPSTLPAHGSYRPVPSHLPSIFSHNNRLDQLKGRWFWG*

>peptide 3 (36 aa)
HGYLPSFNNKLYITRGFRPESHRRSLYSSCTLAGSA*

Sequence

>CNT30580151
ACACGGGTATTTACCTAGTTTTAATAATAAGCTTTACATTACAAGGGGTTTCCGGCCGGAAAGTCACCGGCGTTCGTTGTACAGTTCCTGCACGCTCGCA
GGCAGTGCCTAGTCATCAACCAATCACACATAAAACACCATCCACACTCCCAGCGCACGGTTCATACCGTCCAGTCCCGTCTCATCTCCCTTCGATCTTC
TCTCACAATAATCGTCTCGATCAGCTCAAGGGGAGATGGTTCTGGGGATGATGATGTCGCCGATGTTGTTGTGCCACGGGTCGGCGAGGTGGCCGAGCGG
GTCGAAGGCGCCGCCGGGGTACTTCTTCTTCTCGGGGTCCTTCTCCATGGTGCGCTGGTGCTCGGCAAAGGCGATGGCCACGAACTCGATCACCAGGATG
GTGGGCAGCGAGCCCCACGGCACCGGGTTGCCCAGGTACGTGGCCTGCCCGCCGGGGACGGCCGCCCACTCCTGCGCCTTCACCCAGTTGCCAAGACCCA
GCGCCTCCGGCACCAAGATCCCGGGCT