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Detailed information on CNT30580110


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT308481Echinochloa crusgalliZea mays39.145.1790.46262forward
CNT30344603Echinochloa crusgalliEragrostis tef22.6930.2895.39152forward
CNT30102355Echinochloa crusgalliOryza rufipogon32.9937.3389.59221forward
CNT30115974Echinochloa crusgalliOryza nivara8.6626.4893.158forward

Expression of CNT30580110

Peptides detected in this lncRNA

>peptide 1 (87 aa)
MVLGMMMSPMLLCHGSARWAGRGWPGIHSADMVTRPEVVALAQNGSRPDRDDGASRLGTPTALQLRSPLEDAIAIAASSRWRALIRS*

Sequence

>CNT30580110
ATTTTGTTTGTTTAAGTCGACTTGAGTTTTTGCATGTTAAAACATGTGTAAATTTAGTTAAATATAATTTAACGTACCCGTAGCAACACACGGGTATTTA
CCTAGTTTTAATAATAAGCTTTACATTACAAGGGGTTTCCGGCCGGAAAGTCACCGGCGTTCGTTGTACAGTTCCTGCACGCTCGCAGGCAGTGCCTAGT
CATCAACCAATCACACATAAAACACCATCCACACTCCCAGCGCACGGTTCATACCGTCCAGTCCCGTCTCATCTCCCTTCGATCTTCTCTCACAATAATC
GTCTCGATCAGCTCAAGGGGAGATGGTTCTGGGGATGATGATGTCGCCGATGTTGTTGTGCCACGGGTCGGCGAGGTGGGCAGGGCGGGGCTGGCCGGGC
ATCCACTCGGCGGACATGGTGACGCGGCCGGAGGTGGTGGCGTTGGCGCAGAACGGCAGCCGGCCGGACCGGGACGACGGCGCCAGCAGGCTGGGCACGC
CCACGGCGCTGCAGCTCCGGAGCCCGCTCGAGGACGCCATCGCCATTGCTGCTTCCTCCCGGTGGCGCGCGCTGATCCGATCCTGAGGCAGGCGGAGACA
AGACGAGCAAGCTACCAACAAGTGGCTGGCGTTTGAGAGCGGAGCAGACTCTGCGGCTGCTATTAAGAGC