« Back to Echinochloa crusgalli search


Detailed information on CNT30580107


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8S8T4|UXS4_ARATH, E-value = 3e-85

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30318541Echinochloa crusgalliCorylus avellana61.2767.880.82318forward
CNT30499549Echinochloa crusgalliCoffea canephora27.1728.7882.98141forward
CNT30268105Echinochloa crusgalliChenopodium quinoa28.1317.480.82146forward
CNT30727603Echinochloa crusgalliCorchorus capsularis26.9728.3484.29140forward
CNT30504810Echinochloa crusgalliNicotiana attenuata28.923.0483.33150forward
CNT30636701Echinochloa crusgalliCapsicum annuum28.936.584.67150forward
CNT30182233Echinochloa crusgalliSecale cereale73.9961.7492.19384forward
CNT30222279Echinochloa crusgalliHordeum vulgare57.4298.6893.96298forward
CNT30590847Echinochloa crusgalliMusa acuminata64.7473.5282.74336forward
CNT30510868Echinochloa crusgalliSolanum lycopersicum33.3383.1779.77173forward
CNT30143812Echinochloa crusgalliMedicago truncatula32.1813.583.23167forward
CNT30246244Echinochloa crusgalliAvena sativa73.9947.1793.49384forward
CNT30134072Echinochloa crusgalliLolium perenne73.9952.8992.97384forward
CNT3066796Echinochloa crusgalliLeersia perrieri73.9998.7193.75384forward
CNT30338563Echinochloa crusgalliEragrostis tef73.2291.7991.84380forward
CNT30477892Echinochloa crusgalliArabidopsis halleri62.8130.4779.14326forward
CNT30595456Echinochloa crusgalliOryza meridionalis73.2266.6792.89380forward
CNT30424172Echinochloa crusgalliPapaver somniferum30.4422.6485.44158forward
CNT30325711Echinochloa crusgalliAsparagus officinalis50.181.585.77260forward
CNT30594668Echinochloa crusgalliEragrostis curvula60.3192.8892.97313forward
CNT30723923Echinochloa crusgalliLupinus angustifolius27.1768.7884.4141forward
CNT3064271Echinochloa crusgalliSelaginella moellendorffii40.273881.34209forward

Expression of CNT30580107

Peptides detected in this lncRNA

>peptide 1 (48 aa)
TYRINMPPVSLFLWMLKWIAINFTCASQQEPCANSLCQTQHIQGSHDI*

Sequence

>CNT30580107
ACCTATAGGATTAACATGCCCCCAGTAAGTCTCTTTCTGTGGATGCTCAAGTGGATCGCCATAAACTTCACTTGTGCTAGTCAACAAGAACCTTGCGCCA
ATTCGCTTTGCCAAACCCAACATATTCAAGGTTCCCATGACATTTGATATGATCGTCTTGATCGGGTTGTACTTGTAGTGCACGGGCGACGCGGGGCACG
CGAGGTGGTAGATCCGGTCGACCTCGAGCAGGATTGGCTCGACGACATCGTGGCGGAGCAGCTCGAACCTCGGGTTCCGGAGGTGGTGCGCGACATTCTC
CTTCCTTCCCGTGAAGAAATTGTCGACCACGATCACACTATCTCCCTGCTCCAGCAGCCGGTCCACGAGGTGGCTGCCGACGAACCCGGCCCCGCCGGTG
ACGACGACCCGGCGCGGCGGCGGGCGGTACCCGGCGGGGACGCCGGAGCGGGCGGCGAAGGAGAAGAGCGGGCGGGCGTCGGGGAGATGGGAGGATGGGG
ATAGAGAGAGGTAGGGGCG