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Detailed information on CNT30580093


BLAST search results

BLAST vs Swiss-Prot:
sp|P14584|CB21_RAPSA, E-value = 9e-08

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30400439Echinochloa crusgalliTriticum turgidum22.3265.2894.22173forward
CNT30567058Echinochloa crusgalliActinidia chinensis17.5537.7886.76136forward
CNT30588696Echinochloa crusgalliMusa acuminata20.2658.3687.9157forward
CNT30236705Echinochloa crusgalliBrassica oleracea14.5823.9981.42113forward
CNT30256504Echinochloa crusgalliAvena sativa26.8448.3792.31208forward
CNT307903Echinochloa crusgalliZea mays30.0660.6896.14233forward
CNT30609040Echinochloa crusgalliGossypium raimondii13.9423.4887.04108forward
CNT30346386Echinochloa crusgalliEragrostis tef27.4830.5297.65213forward
CNT30497042Echinochloa crusgalliDigitaria exilis30.8430.0697.07239forward
CNT30551236Echinochloa crusgalliOryza brachyantha28.6522.3195.95222forward

Expression of CNT30580093

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MVLGMMMSPMLLCHGSARWVARFSSGPVPGYADCCTQNPTNASIARRPACSDRCPVSV*

>peptide 2 (46 aa)
MVRWCSAKAMATNSITRMVGSEPHGTGLPRYVACPPGTAAQGVEAEV

Sequence

>CNT30580093
ATTTAGTTAAATATAATTTAACGTACCCGTAGCAACACACGGGTATTTACCTAGTTTTAATAATAAGCTTTACATTACAAGGGGTTTCCGGCCGGAAAGT
CACCGGCGTTCGTTGTACAGTTCCTGCACGCTCGCAGGCAGTGCCTAGTCATCAACCAATCACACATAAAACACCATCCACACTCCCAGCGCACGGTTCA
TACCGTCCAGTCCCGTCTCATCTCCCTTCGATCTTCTCTCACAATAATCGTCTCGATCAGCTCAAGGGGAGATGGTTCTGGGGATGATGATGTCGCCGAT
GTTGTTGTGCCACGGGTCGGCGAGGTGGGTAGCCAGGTTCTCCAGCGGCCCGGTGCCCGGGTACGCCGACTGCTGCACGCAGAACCCCACGAACGCCAGC
ATCGCAAGACGGCCTGCTTGTTCAGACAGATGTCCGGTTAGTGTTTGATGGAGCGAAAGGCTGTCAGTAGAATAAGATTACTGGTACGAAAGAAAGCAGC
AACGGTGGGCGGCTCGGCTCACCGTTCTTGATCTCCTTGAGCTTGTACTCCTCGAACTTGGCGGGGTCCTTGGAGAAGCCGAGCGGGTCGAAGGCGCCGC
CGGGGTACTTCTTCTTCTCGGGGTCCTTCTCCATGGTGCGCTGGTGCTCGGCAAAGGCGATGGCCACGAACTCGATCACCAGGATGGTGGGCAGCGAGCC
CCACGGCACCGGGTTGCCCAGGTACGTGGCCTGCCCGCCGGGGACGGCCGCCCAGGGGGTCGAAGCCGAAGTCCC