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Detailed information on CNT30580030


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522951Echinochloa crusgalliSetaria italica38.9534.6792.41303forward
CNT3014551Echinochloa crusgalliZea mays15.4224.8486.67120forward
CNT30354556Echinochloa crusgalliEragrostis tef22.1154.0986.05172reverse complement

Expression of CNT30580030

Peptides detected in this lncRNA

>peptide 1 (49 aa)
SHIIHNLISLIMKVTRYLPKQSDQTSYMRMHTLSITLLRSYVLVCSNST*

>peptide 2 (82 aa)
MESMEYVVVGHTYHHITSIDLLLLCWVSIWISCSSIRAAPCAPAFPRSGPPSARGARGMRSRRRSFCLCCFSSLLKCSCSPP*

Sequence

>CNT30580030
AGCCACATAATACATAACTTAATTTCATTAATAATGAAGGTTACACGCTACCTGCCGAAGCAGAGTGATCAGACATCGTACATGCGTATGCATACGCTCT
CAATTACATTATTGCGATCCTACGTTCTTGTATGTAGCAACAGTACGTAGTATTGAGCAACACAAGTCACATCTGCTCTTATTTACTTTATATATACACA
CGTCATCGCCGCGCTCATATCATGGAGAGTATGGAGTATGTTGTAGTCGGGCATACATATCATCACATCACCAGTATCGATCTGCTTCTGCTCTGCTGGG
TGTCGATCTGGATCAGTTGCAGTAGTATCCGTGCGGCACCCTGTGCTCCTGCTTTCCCTCGTAGTGGGCCTCCTTCTGCTCGCGGTGCTCGTGGTATGCG
TAGCCGCCGGCGTTCCTTTTGCTTGTGCTGCTTCTCCTCCCTCTTGAAGTGCTCCTGCTCGCCGCCGTAGCCGTAGCTGCTGCGGGAGTACTCGTCGGAG
TAGACGGCGGCCTGCCTGCCGCCGCCGTAGCCGGCGCCGTTGTAGCAGTCGTCGGCGTAGGCGCCGGGCCTCCTGCGGTCCATGTCGTCGTAGCACTCGT
CGGTGTGAGAGTACACCCTCCGGCTGCCGTGCCGGCCGGCGTCGTAGCACTCGTCGGTGGTGTTGGAGTACATGCTCCTGCCGCCGTGGTAGTAGTCAGC
CATCTCGATCGATCGGCGGTTGGCTGGCTCACAAAGCAGAGATTATTGCTGCTAGCTTAGTGGGTGCAGGTGTTGCTT