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Detailed information on CNT30580015


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SDM1|CB121_HORVU, E-value = 4e-53

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30304990Echinochloa crusgalliTriticum aestivum39.1486.8591.28218forward
CNT30589124Echinochloa crusgalliMusa acuminata28.1951.6487.9157forward
CNT30254921Echinochloa crusgalliAvena sativa40.5794.5689.82226forward
CNT30669889Echinochloa crusgalliTriticum dicoccoides38.9685.4390.32217forward

Expression of CNT30580015

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MGFWPESRRRSLYSPARSQAVPSHQPITHETPSTLPAHGSYRPVPSHLSSSLTIIVSAQG*

>peptide 2 (67 aa)
MNTYLVLIISFTLQWVSGRKVAGVHCTVLHARRQCLVINQSHMKHHPHSQRTVHTVQSRLISLLLSQ*

>peptide 3 (97 aa)
MMMSPMLLCHGSAMWVASNGGSPFLISLSLYSSNLTGSLEKPSGSKAMATNSITRMVGSEPHGTGLPRYVACPPGTAAHSCAFTQLPRPRASGTKIPG

Sequence

>CNT30580015
TAAATATAATTTAAACCGTAGCAACTAATGAACACTTATCTAGTTTTAATAATAAGCTTTACATTACAATGGGTTTCTGGCCGGAAAGTCGCCGGCGTTC
ATTGTACAGTCCTGCACGCTCGCAGGCAGTGCCTAGTCATCAACCAATCACACATGAAACACCATCCACACTCCCAGCGCACGGTTCATACCGTCCAGTC
CCGTCTCATCTCTCTTCTTCTCTCACAATAATCGTCTCAGCTCAAGGGTAGATCGTTCTGGGGATGATGATGTCGCCGATGTTGTTGTGCCACGGGTCGG
CGATGTGGGTAGCCAGCAACGGCGGCTCACCGTTCTTGATCTCCTTGAGCTTGTACTCCTCGAACTTGACGGGGTCCTTGGAAAAGCCGAGCGGGTCGAA
GGCAATGGCCACGAACTCGATCACCAGGATGGTGGGCAGCGAGCCCCACGGCACCGGGTTGCCCAGATACGTGGCCTGCCCGCCGGGGACGGCCGCCCAC
TCCTGCGCCTTCACCCAGTTGCCAAGACCCAGAGCCTCCGGCACCAAGATCCCGGGC