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Detailed information on CNT30580001


BLAST search results

BLAST vs Swiss-Prot:
sp|P69310|UBIQ_AVESA, E-value = 4e-41

BLAST vs NONCODE:
NONSTUT000620, E-value = 1e-26

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693384Echinochloa crusgalliOryza sativa29.454393.95215forward
CNT30674820Echinochloa crusgalliSetaria viridis48.2266.4294.32352forward
CNT30523172Echinochloa crusgalliSetaria italica44.6651.593.87326forward
CNT30518633Echinochloa crusgalliJuglans regia5085.2886.58365forward
CNT30164510Echinochloa crusgalliPistacia vera53.4238.7383.59390forward
CNT30178164Echinochloa crusgalliSecale cereale57.1261.6994.72417forward
CNT30435385Echinochloa crusgalliAegilops tauschii57.1272.0294.48417forward
CNT30456592Echinochloa crusgalliSaccharum spontaneum34.2530.4196250forward
CNT30605213Echinochloa crusgalliGossypium raimondii37.490.488.64273forward
CNT30571087Echinochloa crusgalliVitis vinifera53.5658.9785.42391forward
CNT30101348Echinochloa crusgalliOryza rufipogon28.3611.592.27207forward
CNT30497500Echinochloa crusgalliDigitaria exilis52.8826.0893.52386forward

Expression of CNT30580001

Peptides detected in this lncRNA

>peptide 1 (56 aa)
LNKHSITFNTSKTRIKHRIHNDMISSKPKVRITIRDAGVLFQEKLLITCDKKKIII*

>peptide 2 (74 aa)
MRRCWSGGMPSLSWILAFTLSMVSEDSTSSVMVFPVRVFTKICILAGAPFPGGGRPYLRWKRRLLLACGGGVEWC

>peptide 3 (34 aa)
MRQKEDYHLTRLFSICPLPIITSDQPTPAGCRRR*

Sequence

>CNT30580001
TTGAACAAACATAGTATAACATTTAACACAAGCAAAACTCGAATTAAACATAGGATCCATAACGACATGATATCATCAAAACCAAAAGTACGCATCACCA
TAAGAGATGCAGGTGTTCTGTTCCAAGAAAAACTACTTATAACATGCGACAAAAAGAAGATTATCATCTAACAAGACTTTTTTCCATTTGCCCTCTTCCC
ATCATAACATCGGACCAGCCTACGCCTGCTGGTTGTAGACGTAGGTGAGGCCGCACTTACCGCAGTAGTGGCGGTCGAAGTGGTTGGCCATGAAGGTCCC
CGCGCCGCACTCGGCGTTGGGGCACTCCTTGCGGAGGCGGGTGACCTTGCCGGTGGCGTCGTCGACCTTGTAGAACTGGAGCACGGCGAGCTTCACCTTC
TTGTGCTTGTGCTTGATCTTCTTGGGCTTGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCG
AAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGG
TCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATCTTGGCAGGCGCGCCCTTTCCCGGTGGCGGCCGCCCTTACTTGAGGTGGAAGAGGAGGCTGCTTCT
CGCCTGCGGCGGCGGGGTGGAGTGGTGTGG