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Detailed information on CNT30579967


BLAST search results

BLAST vs Swiss-Prot:
sp|P12331|CB22_ORYSJ, E-value = 3e-148

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30300806Echinochloa crusgalliTriticum aestivum36.5145.5393.28372forward
CNT30225948Echinochloa crusgalliHordeum vulgare43.3872.4686.65442forward
CNT30394515Echinochloa crusgalliTriticum turgidum35.2343.6794.15359forward
CNT30664418Echinochloa crusgalliTriticum dicoccoides34.4541.2594.87351forward
CNT30685532Echinochloa crusgalliTriticum urartu31.0133.6994.94316forward
CNT30721767Echinochloa crusgalliTriticum spelta23.2631.5696.62237forward
CNT30345522Echinochloa crusgalliEragrostis tef46.2247.4394.69471forward
CNT30103422Echinochloa crusgalliOryza rufipogon45.9336.0893.16468forward
CNT30556832Echinochloa crusgalliPanicum hallii37.7867.1993.51385forward

Expression of CNT30579967

Peptides detected in this lncRNA

>peptide 1 (95 aa)
ILKIYNWMHISLIPSRTCVQIHYWYTAACDPRAPITHTCTPCSTYEYVRLRYTHATPPTVASSRVATRHPHHSCPASSSLTCRGRSWWRRPMRCC*

>peptide 2 (53 aa)
MVMRPSPKTSLAPVAGLLTRAREVRAMVAAAMSIGSDHSLLWMMRCSVLCSSVM

>peptide 3 (63 aa)
YIKNLQLDAYFIDPVQNMRTNTLLVHSSLRSQGSHHTYLYTLQYIRIRTSTVHARDPTHGRFI*

>peptide 4 (58 aa)
MACTKNPNMENMARRPFLISFTLSSAKASGSSARPSGSKLPPGYRGSTTSPSGPPAMR*

Sequence

>CNT30579967
TATATTAAAAATTTACAACTGGATGCATATTTCATTGATCCCGTCCAGAACATGCGTACAAATACACTACTGGTACACAGCAGCCTGCGATCCCAGGGCT
CCCATCACACATACTTGTACACCCTGCAGTACATACGAATACGTACGTCTACGGTACACGCACGCGACCCCACCCACGGTCGCTTCATCTAGAGTAGCAA
CGCGTCATCCACACCACTCATGCCCAGCCTCGAGCTCGCTCACTTGCCGGGGACGAAGTTGGTGGCGTAGGCCCATGCGTTGTTGTTGACGGGGTCGGCG
AGGTGGTCGGCGAGGTTCTCGAGTGGGCCTTTGCCGGTGACGATGGCCTGCACGAAGAATCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCT
CCTTCACCTTGAGCTCCGCGAAGGCCTCCGGGTCGTCGGCGAGGCCCAGTGGGTCGAAGCTGCCGCCGGGGTACAGAGGGTCCACCACCTCCCCGAGCGG
GCCGCCGGCGATGCGGTAGCCCTCGACGGCGCCCATGAGCACCACCTGGCAGGCCCAGATGGCCAGGATGCTCTGCGCGTGGACCAGGCTCGGGTTGCCC
AGGTAGTCCAGCCCGCCCTCGCTGAAGATCTGGGAGCCCGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTGCGGGCCAGGAGCTCCGGGAACA
CGCAGCCCGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCACCGGTCAGGTAGCTCGGGGGCTCGCCGGAGAGCGGGCCGAGGTACAGGACGCGGTCGGG
CCCGTACCACGGGCTGCCGGACGCTGCCGGTTTGGGCTTGGCAGCGGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGACGTCCCTGGCGCCGGTCGCC
GGCTTGCTGACGAGAGCGCGGGAGGTGAGAGCCATGGTGGCGGCGGCCATGTCGATCGGATCAGATCACTCCTTGCTGTGGATGATGCGTTGCTCTGTGT
TGTGTTCTAGTGTGATGAT