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Detailed information on CNT3057989


BLAST search results

BLAST vs Swiss-Prot:
sp|Q70XV9|NU1C_AMBTC, E-value = 1e-113

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30531354Amborella trichopodaEucalyptus grandis99.4319.5787.93522forward
CNT30317759Amborella trichopodaCorylus avellana8421.6389.57441forward
CNT30518502Amborella trichopodaJuglans regia47.4365.0189.16249forward
CNT30615574Amborella trichopodaSesamum indicum99.2434.9988.68521forward
CNT30406240Amborella trichopodaBeta vulgaris47.2495.7588.71248forward
CNT30201817Amborella trichopodaPisum sativum58.865087.38309forward
CNT30712407Amborella trichopodaGlycine max84.1935.6585.75442forward
CNT30569544Amborella trichopodaActinidia chinensis8411.9487.76441forward
CNT30237694Amborella trichopodaBrassica oleracea42.4820.3789.69223forward
CNT30262672Amborella trichopodaBrassica rapa25.711.8992.59135forward
CNT30608772Amborella trichopodaGossypium raimondii59.8110088.54314forward
CNT30215974Amborella trichopodaHelianthus annuus96.5769.2686.59507forward
CNT30596717Amborella trichopodaOryza meridionalis82.6746.6788.94434forward
CNT30360555Amborella trichopodaLactuca sativa99.4347.6787.36522forward
CNT30151942Amborella trichopodaPrunus persica99.4322.2485.25522forward
CNT3035415Amborella trichopodaCucumis melo78.6761.8388.86413forward
CNT30148081Amborella trichopodaBrachypodium distachyon82.6742.8487.1434forward
CNT30116024Amborella trichopodaOryza nivara56.5766.2987.21297forward
CNT30723989Amborella trichopodaLupinus angustifolius23.628.993.55124forward

Expression of CNT3057989

Peptides detected in this lncRNA

>peptide 1 (39 aa)
ALANVKKILIVVPKTPPILFILKSSGIAMYGIERFHPPK*

Sequence

>CNT3057989
AGCTTTAGCTAATGTAAAAAAGATACTAATTGTTGTTCCAAAAACTCCACCAATTCTATTTATTCTGAAAAGCTCAGGAATTGCTATGTATGGAATAGAA
AGATTCCACCCACCCAAATAAAGAACCGTTACAAATAATGAAGAAACTAGTAGATTTAGGTAAGAAGCAAGATAAAATAAACCAAATTTAATACCTGAAT
ATTCGGTTTGATAACCCGCTACTAATTCTTCCTCCGCTTCTGGTAAATCAAAGGGCAACCTCTCACATTCCGCTAAGGAAGAAATTAGAAAAGCTAGAAA
CCCTATAGGTTGACGCCACAGATTCCACCCCCAAAAACCATATTTATACTGTGCCTCCACTATATCAACCGTACTTGAACTGTTAGATAGTAGAGATATT
GATAACACACACAGAGTTAACGGTATTTCATAACTAATAGATTGAGCAGCAGCTCGTAGACCACCTGAAAAAGAATATTTATTATTTGATGCATATCCTG
ACATAAGAAGTCCAATAGGAGCAAT