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Detailed information on CNT30579873


BLAST search results

BLAST vs Swiss-Prot:
sp|O04133|SRC2_SOYBN, E-value = 8e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30680887Echinochloa crusgalliTriticum urartu7.1133.9283.5197forward
CNT30363948Echinochloa crusgalliSorghum bicolor21.4195.4292.81292forward

Expression of CNT30579873

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MCTSPTSRSPRARSARRRTWREPAPVAGTLKRSVAFQVGLRPPVRSAWIRCRERGSPESETTA*

>peptide 2 (57 aa)
MSPIRSPPTAPPSSPAPSPIPKLFFFFCGFTACCWYPYPACGGYPYPPYPACGGGGG*

>peptide 3 (35 aa)
MAAERTRRLSGGDERESRWIGWFFLPKLITWGMDGW

>peptide 4 (31 aa)
NENRNKTAIHIMSHICCIIFTLPYQKIRCMI*

Sequence

>CNT30579873
AAATGAGAACAGAAATAAAACTGCAATTCATATAATGTCTCACATTTGCTGCATCATATTTACATTACCATATCAGAAGATAAGATGCATGATTTGATTT
GGTCCTGACAGTTGAGTAGTACGCACGTACTCCAGTAGAAACGAAACATATCACAAACGCAAATCCAAAACAAAAATAACTCTGCTGCAGTATCCTCTCA
TCGGAGCGCTCTAGAAGTCAAATCCACCGTCGAAGCCGGCGTCGTAGCCGGCATCGTACGCCGACGAGTCCGAGATCATGTCCCCGATCAGGAGCCCGCC
GACGGCGCCTCCGAGCAGCCCGGCACCGAGCCCCATCCCGAAGTTGTTCTTCTTCTTCTGCGGCTTCACGGCCTGCTGCTGGTACCCGTACCCGGCCTGC
GGCGGATACCCGTATCCGCCGTACCCGGCTTGCGGCGGCGGGGGCGGGTAGCCGTAGCCGGCGGGCTGCTGCTGTGGGTAGCCGTAGCCGTACTGCGGCG
GAGGAGCACCGCCGTAGGGAGCCCCGGTGCTGGGGCCGGCGGCAGGGTAGGCTGTCACTGGCTCACCGGCCTTTGCCGGCTTGCCCGAGGATGGCGGGTA
GCCGGATGGGGGCGGGTAAGCGGTTGATGGCGGTGGGAGGCGGGTACGCGTCGGCCTTGGCTGCCGGCGGGTAGGCGGTGGGAGGCGGGTACGCGTCGGC
CTTGGCTGCCGGCGGGTAGGCGGAGGGAGGCGGGTACGAATCGGCCTTGCCTGCCGGCGGGTAGGCCGATGGAGGCGGGTACGCGGCGGCAGGTGGAGGC
CGGCTGTACGCGGATTGGGCGGAGGTGGGAGCGTACCCGGCGGCCGATTGGGTGACCTCGCCGAGCTTGTACGAGAAGTTTAGCACTCCCTGTGCCTTGC
CGGAGGAGATCTTGCGGACCTGGTAGGCGACGAACTTGGAGGGGACGGAGCCGTCGGGGGCGCCGGAGAGGAGCTCGGAGAGCGGGATGTGTACCTCGCC
GACGTCGCGGTCGCCGAGGGCGCGCTCGGCGCGGAGGAGGACGTGGAGGGAGCCCGCGCCGGTGGCCGGGACGTTGAAGCGGAGCGTGGCGTTCCAGGTG
GGGTTGCGGCCGCCGGTGCGGTCGGCCTGGATCCGCTGCCGCGAGCGCGGGTCGCCGGAGAGCGAGACGACGGCGTAGACCTCCATCTTGGAGAGCAGGT
TCACCTCCTTGAGATCCTTGGCCGAGATCAGCGTCAGCTCCAGCGTCCTCGTCGCCATGGCTGCTGAGAGAACCCGCAGACTTTCCGGTGGAGACGAGAG
AGAGTCAAGATGGATCGGTTGGTTCTTCCTTCCAAAATTGATCACTTGGGGGATGGATGGATGG