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Detailed information on CNT3057987


BLAST search results

BLAST vs Swiss-Prot:
sp|Q70XV9|NU1C_AMBTC, E-value = 1e-82

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671235Amborella trichopodaSetaria viridis6.0629.2789.38113forward
CNT30531958Amborella trichopodaEucalyptus grandis23.4311.7486.5437forward
CNT3020678Amborella trichopodaCitrullus lanatus9.2844.8290.17173forward
CNT30199883Amborella trichopodaPisum sativum18.546.5685.51345forward
CNT30569543Amborella trichopodaActinidia chinensis21.938.5587.04409forward
CNT30236182Amborella trichopodaBrassica oleracea15.7653.3688.1294forward
CNT30264063Amborella trichopodaBrassica rapa5.4726.9892.16102forward
CNT30689544Amborella trichopodaTriticum urartu205.9786.6373forward
CNT30152193Amborella trichopodaPrunus persica23.6510.0984.81441forward

Expression of CNT3057987

Peptides detected in this lncRNA

>peptide 1 (31 aa)
DDNSDVIISILEPYIIPRFHTAPRWSHKSKD*

Sequence

>CNT3057987
CGATGATAACAGTGATGTTATCATCTCTATTCTAGAACCGTACATAATACCTCGGTTTCATACGGCTCCTCGATGGTCACATAAATCTAAGGACTGAAAC
CTTAGTCTNNNNNNNNNNNNNNNNNNNNAGCTTTAGCTAATGTAAAAAAGATACTAATTGTTGTTCCAAAAACTCCACCAATTCTATTTATTCTGAAAAG
CTCAGGAATTGCTATGTATGGAATAGAAAGATTCCACCCACCCAAATAAAGAACCGTTACAAATAATGAAGAAACTAGTAGATTTAGGTAAGAAGCAAGA
TAAAATAAACCAAATTTAATACCTGAATATTCGGTTTGATAACCCGCTACTAATTCTTCCTCCGCTTCTGGTAAATCAAAGGGCAACCTCTCACATTCCG
CTAAGGAAGAAATTAGAAAAGCTAGAAACCCTATAGGTTGACGCCACAGATTCCACCCCCAAAAACCATATTTATACTGTGCCTCCACTATATCAACCGT
ACTTGAACTGTTAGATAATCATAGTCGATGATAACATCACTGTTATCATCTCTATTCCAGAACCGTACATGATACCTCGGTTTCATACGGCTCCTCGATG
GTCACATAAATCTAAGGACTGAAACCTTAGTCTTGCCTCGGCATATCCGTAGAGTAGAGATGGATCGGAATGTCCGGAATTAGACCAATGGGATTCTGTC
CGCTATAAAAAAAAAAGGGGGTGCTTCTGAATCTATCTTATCCTTTACCCATTATTTGTTGTTCAGTAATAACTCGATCTTTCAATAAAATACTCGTTGT
CTCAAGAGATATTTCGACCCATATCTTTCATCTTTCGATTACGAAGAAAAATAAGTATAGTACAAGGGAACAAGCTAGTTCATGAGGCATGTAATTGATA
AGTCATGATAATTCCATCCGGATGAGGATGAATTATTAATAGAGAAAAGAAAAAAGAAAGAAAGATCTCTTAGTATTCATTTTTCTATTGCATTCCCTTC
GTTCCTATTCTTCTTTCTCAGAGGGGACTATATAAAGATAAAGGATTACTTCGTTCCTGATAGTTCTTCTTTAACTAGTGGATAGGAATATACTCTGGAT
CGGGATCATAAGGAAGTACTGCTTGATCATTTCTACCAACGTCAAACCCTCATTCTGATTCCTTTTACTTCTCCTTATGCAGAAATCCATTTTTGGATAC
GTTACATTATCTACATTACTAACCCTTTGTGCACCTTAGTGTTTCTAACCGTCCACTCACTTTTGATTGATCTCCGCTATGGTAATAGGTAAATACTATA
GAATAGGAGAAACTCCATATGGTTGATCTTTTGCTCCCGCTTCAAGCCACGATACGATGACTAATCAACTAATCTTGGGCTTGGGGTAAACAGTTTCCAC
TGCTTATGTTGGTTCCTCTTGTACATAGGGAATGAGACTCCATTTTCTTACTACAAATCCATAAGCAAAGCAGTTTTGTTTCACTCATATAACTATCTGG
TTTAGCTCATCAATCGGAATCATTGAATCAATAACGTAGAATCAATAACGTAGAGTAGAATATATATATATATATATATATATATATATATATATATATA
TTCTTTATTCGTTCTTTCCTCTGATCCTATACTTTCTTTATATACCTATCTATAACCTAATATTAGATTCTAATACTAAAATACTAAAAAAAGAAAAGAC
GTAAAAGTTAATGTTCTAACGAATCGCACGTAGAGATATTGATAACACACACAGAGTTAACGGTATTTCATAACTAATAGATTGAGCAGCAGCTCGTAGA
CCACCTGAAAAAGAATATTTATTATTTGATGCATATCCTGACATAAGAAGTCCAATAGGAGCAAT