« Back to Echinochloa crusgalli search


Detailed information on CNT30579836


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30256907Echinochloa crusgalliAvena sativa64.6477.9788.34223forward
CNT30148497Echinochloa crusgalliBrachypodium distachyon26.6731.6295.6592forward

Expression of CNT30579836

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MVTRPEVVALAQNGSRPDRDDGASRLGTPTALQLRSPLDDAIAIAAAASSRWR*

>peptide 2 (37 aa)
GEHGPAAVVDLGLLEPLEVRRHGGQGGAGRASTRRTW*

Sequence

>CNT30579836
GGCGAGCATGGCCCAGCGGCAGTGGTAGACCTCGGACTCCTTGAACCGCTCGAAGTTCGCCGGCACGGTGGGCAGGGCGGGGCTGGCCGGGCATCCACTC
GGCGGACATGGTGACGCGGCCGGAGGTGGTGGCGTTGGCGCAGAACGGCAGCCGGCCGGACCGGGACGACGGCGCCAGCAGGCTGGGCACGCCCACGGCG
CTGCAGCTCCGGAGCCCGCTCGACGACGCCATCGCCATTGCTGCCGCTGCTTCCTCCCGGTGGCGCTGATCCGATCCTGAGGCGGAGACAAGACGAGCTA
CAACAACAAGTGGCGTTTGAGAGCGGAGCAGAATCTGCGGCTGCT